Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.615 kcal/mol/HA)
✓ Good fit quality (FQ -4.92)
✗ High strain energy (16.1 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-11.062
kcal/mol
LE
-0.615
kcal/mol/HA
Fit Quality
-4.92
FQ (Leeson)
HAC
18
heavy atoms
MW
242
Da
LogP
2.25
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 16.1 kcal/mol
Interaction summary
Collapsible panels
H-bonds 1
Hydrophobic 24
π–π 1
Clashes 8
Severe clashes 1
| Final rank | 5.235790016328837 | Score | -11.062 |
|---|---|---|---|
| Inter norm | -0.943534 | Intra norm | 0.328977 |
| Top1000 | no | Excluded | yes |
| Contacts | 17 | H-bonds | 1 |
| Artifact reason | excluded; geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 17.6 | ||
| Residues | A:ALA34;A:ASP54;A:ILE160;A:ILE47;A:LEU90;A:MET55;A:NDP301;A:PHE58;A:PHE94;A:PRO91;A:SER89;A:THR184;A:THR86;A:TYR166;A:TYR57;A:VAL32;A:VAL33 | ||
Protein summary
223 residues
| Protein target | T06 | Atoms | 3452 |
|---|---|---|---|
| Residues | 223 | Chains | 1 |
| Residue summary | ARG:408; VAL:352; LYS:308; LEU:304; PRO:238; ILE:209; GLU:195; THR:182; SER:176; ALA:160; PHE:140; ASN:126; GLY:126; ASP:108; GLN:85; NDP:74 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 8RHT | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 6 |
| IFP residues | A:ALA34; A:ASP54; A:HIS182; A:ILE160; A:ILE47; A:LEU90; A:LEU97; A:MET55; A:NDP301; A:PHE233; A:PHE58; A:PHE94; A:PRO91; A:SER89; A:THR184; A:THR86; A:TRP49; A:TYR166; A:TYR57; A:VAL32; A:VAL33 | ||
| Current overlap | 17 | Native recall | 0.81 |
| Jaccard | 0.81 | RMSD | - |
| H-bond strict | 0 | Strict recall | 0.00 |
| H-bond same residue+role | 0 | Role recall | 0.00 |
| H-bond same residue | 0 | Residue recall | 0.00 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1380 | 2.6278197537275587 | -0.967421 | -14.2693 | 2 | 12 | 10 | 0.48 | 0.00 | - | no | Open |
| 2362 | 2.842844435868647 | -1.28184 | -21.0014 | 10 | 13 | 0 | 0.00 | 0.00 | - | no | Open |
| 2358 | 3.2562846556821565 | -1.3392 | -23.1404 | 9 | 13 | 0 | 0.00 | 0.00 | - | no | Open |
| 2361 | 3.3535864206016495 | -1.03226 | -16.3809 | 8 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 2360 | 4.606014877441969 | -1.32651 | -22.8802 | 6 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 2364 | 3.6506685250051834 | -0.94348 | -17.2371 | 8 | 12 | 0 | 0.00 | 0.00 | - | yes | Open |
| 1377 | 4.4967544827722765 | -1.0424 | -15.784 | 1 | 17 | 17 | 0.81 | 0.00 | - | yes | Open |
| 1381 | 5.025124226392778 | -0.876227 | -10.9846 | 2 | 12 | 10 | 0.48 | 0.00 | - | yes | Open |
| 2363 | 5.0664983623922275 | -0.954682 | -10.9207 | 12 | 10 | 0 | 0.00 | 0.00 | - | yes | Open |
| 1379 | 5.235790016328837 | -0.943534 | -11.062 | 1 | 17 | 17 | 0.81 | 0.00 | - | yes | Current |
| 2359 | 5.837822502889143 | -1.12664 | -17.5892 | 7 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2357 | 6.42925208784257 | -1.12482 | -14.877 | 9 | 13 | 0 | 0.00 | 0.00 | - | yes | Open |
| 1378 | 6.573610199626651 | -1.23945 | -15.4258 | 6 | 15 | 15 | 0.71 | 0.25 | - | yes | Open |
| 1382 | 7.2105535514380215 | -1.15853 | -15.9071 | 5 | 14 | 14 | 0.67 | 0.25 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-11.062kcal/mol
Ligand efficiency (LE)
-0.6146kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-4.925
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
18HA
Physicochemical properties
Molecular weight
242.3Da
Lipinski: ≤ 500 Da
LogP (cLogP)
2.25
Lipinski: ≤ 5
Rotatable bonds
3
Conformational strain (MMFF94s)
Strain energy (ΔE)
16.11kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
54.03kcal/mol
Minimised FF energy
37.92kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.