FAIRMol

Z18499260

Pose ID 6486 Compound 3512 Pose 390

DB fairmolDocking pose analysis is being read from this database.
Compound detail Protein structures Back to compounds
Molecular metrics status: done
RDKit SASA-based burial metrics are cached.
SASA cached
T10
L. infantum R5P L. infantum
Ligand Z18499260

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak SASA cached
Weak or marginal quality
Binding strong Geometry medium Native strong SASA done
Strain ΔE
26.3 kcal/mol
Protein clashes
5
Internal clashes
5
Native overlap
contact recall 1.00, Jaccard 0.94, H-bond role recall 0.45
Burial
87%
Hydrophobic fit
67%
Reason: no major geometry red flags detected
5 protein-contact clashes 5 intramolecular clashes 50% of hydrophobic surface appears solvent-exposed (6/12 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Molecular report
Full metrics ↗
Weak Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-1.194 kcal/mol/HA) ✓ Good fit quality (FQ -9.57) ✓ Strong H-bond network (8 bonds) ✓ Deep burial (87% SASA buried) ✓ Lipophilic contacts well-matched (67%) ✗ High strain energy (26.3 kcal/mol) ✗ Geometry warnings
Score
-21.491
kcal/mol
LE
-1.194
kcal/mol/HA
Fit Quality
-9.57
FQ (Leeson)
HAC
18
heavy atoms
MW
264
Da
LogP
1.81
cLogP
Final rank
3.9751
rank score
Inter norm
-1.371
normalised
Contacts
18
H-bonds 12
Strain ΔE
26.3 kcal/mol
SASA buried
87%
Lipo contact
67% BSA apolar/total
SASA unbound
476 Ų
Apolar buried
278 Ų

Interaction summary

HBD 1 HBA 7 HY 2 PI 1 CLASH 5

HBD/HBA · H-bonds (geometric)
HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: permissive. Residues: 5.

PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: permissive.
Name6FXWContacts17
PoseOpen native poseHB0
IFP residues
ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49
Current overlap17Native recall1.00
Jaccard0.94RMSD-
HB strict6Strict recall0.46
HB same residue+role5HB role recall0.45
HB same residue6HB residue recall0.55

Protein summary

155 residues
Protein targetT10Atoms4590
Residues155Chains1
Residue summaryILE:494; ARG:384; ALA:360; VAL:352; LEU:304; GLU:300; THR:280; MET:272; LYS:220; ASP:216; TYR:210; HIS:204; GLY:182; SER:176; GLN:170; ASN:140

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
390 3.9750786870876973 -1.37075 -21.4912 12 18 17 1.00 0.45 - no Current

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
✓ Metrics available

Scoring & efficiency
Docking score -21.491kcal/mol
Ligand efficiency (LE) -1.1940kcal/mol/HA
Score / heavy atom count
Fit quality (FQ) -9.569
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count 18HA

Physicochemical properties
Molecular weight 264.3Da
Lipinski: ≤ 500 Da
LogP (cLogP) 1.81
Lipinski: ≤ 5
Rotatable bonds 6

Conformational strain (MMFF94s)
Strain energy (ΔE) 26.28kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy 35.91kcal/mol
Minimised FF energy 9.63kcal/mol

SASA & burial

✓ computed
SASA (unbound) 476.1Ų
Total solvent-accessible surface area of free ligand
BSA total 415.4Ų
Buried surface area upon binding
BSA apolar 278.3Ų
Hydrophobic contacts buried
BSA polar 137.1Ų
Polar contacts buried
Fraction buried 87.2%
> 60 % indicates good pocket engagement
Lipophilic contact ratio 67.0%
BSA apolar / BSA total — high = hydrophobic driver
Δ Non-polar SASA -2110.6Ų
SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.
Receptor non-polar SASA 2417.4Ų
Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)
Complex non-polar SASA 645.8Ų
Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)