FAIRMol

Z56905026

Pose ID 25000 Compound 833 Pose 2057

DB Docking_panel_21Docking pose analysis is being read from this database.
Molecular metrics status: queued
Pose metrics recompute is queued in the background.
Metrics cached · SASA missing
T12
Type B ribose-5-phosphate isomerase (RpiB) Trypanosoma brucei brucei TREU927
Ligand Z56905026
PDB6FXS

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Promising No SASA yet
Promising and worth follow-up
Binding strong Geometry medium Native strong SASA missing
Strain ΔE
not computed
Protein clashes
3
Internal clashes
3
Native overlap
contact recall 0.81, Jaccard 0.68, H-bond role recall 0.30
Burial
94%
Reason: no major geometry red flags detected
3 protein-contact clashes 3 intramolecular clashes

Interaction summary

HB 14 HY 10 PI 3 CLASH 3
Final rank60.458Score-22.750
Inter norm-0.689Intra norm-0.186
Top1000noExcludedyes
Contacts16H-bonds6
Artifact reasonexcluded; geometry warning; 7 clashes; 4 protein clashes
Residues
ARG140 ARG144 ASN106 HIS105 HIS141 MET101 TYR97 ARG116 ARG46 CYS72 GLY73 GLY77 HIS14 ILE15 ILE76 SER74

Protein summary

302 residues
Protein targetT12Atoms4598
Residues302Chains2
Residue summaryARG:576; ILE:456; VAL:448; GLU:360; ALA:340; LEU:304; TYR:252; HIS:204; PRO:196; THR:196; GLY:182; LYS:176; ASP:168; PHE:160; MET:153; SER:121

Receptor context

1 kept / 0 excluded
Receptor context filtering: interactions and SASA are computed against protein atoms plus allowed cofactors/ions. Native ligand-like HETATM partners are excluded from scoring.
Kept context 1 Excluded HETATM 0
Kept cofactors / ions
A:CSD72

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: permissive.
Name6FXSContacts16
PoseOpen native poseHB0
IFP residues
ARG140 ARG144 ASN106 HIS105 HIS141 ARG46 ASP13 CYS72 GLY73 GLY75 GLY77 HIS14 ILE15 ILE76 SER74 TYR49
Current overlap13Native recall0.81
Jaccard0.68RMSD-
HB strict3Strict recall0.25
HB same residue+role3HB role recall0.30
HB same residue4HB residue recall0.40

HB · H-bonds

Mode: permissive. Count shows atom-level H-bonds; unique residues in summary: 0.

PI · π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
2298 2.6677034637500725 -0.658265 -22.7189 4 7 0 0.00 0.00 - no Open
2306 2.750509378313974 -0.521267 -16.5607 3 12 0 0.00 0.00 - no Open
1613 2.9679257382136015 -0.374643 -14.0856 2 10 0 0.00 0.00 - no Open
2297 2.9845520091747617 -0.563661 -16.2794 7 10 0 0.00 0.00 - no Open
2311 3.034358575654679 -0.471409 -15.0792 6 9 0 0.00 0.00 - no Open
2303 3.1580178110278108 -0.783442 -20.2173 7 11 0 0.00 0.00 - no Open
1621 3.18589487820034 -0.351123 -12.7958 3 11 0 0.00 0.00 - no Open
2307 3.2138406827009662 -0.505669 -15.265 4 9 0 0.00 0.00 - no Open
2299 3.4340348823170115 -0.69431 -20.8177 6 9 0 0.00 0.00 - no Open
1917 3.550918223710287 -0.952882 -24.1188 2 13 0 0.00 0.00 - no Open
1924 3.5738000505406307 -0.945187 -26.4518 10 16 0 0.00 0.00 - no Open
1617 4.059523475815009 -0.455116 -15.4438 3 11 0 0.00 0.00 - no Open
2300 4.087164241957928 -0.624573 -17.8538 4 10 0 0.00 0.00 - no Open
2181 4.179391510526076 -0.58854 -17.313 4 18 0 0.00 0.00 - no Open
2305 4.2783973332945475 -0.530957 -14.5058 5 11 0 0.00 0.00 - no Open
1908 4.480523305686798 -1.04311 -20.4245 9 18 0 0.00 0.00 - no Open
2191 4.496058000925784 -0.84101 -21.5086 7 18 0 0.00 0.00 - no Open
1916 4.524081373833663 -1.12885 -25.9408 7 15 0 0.00 0.00 - no Open
1922 4.616441285625714 -0.874697 -23.1538 8 17 0 0.00 0.00 - no Open
1920 4.676111258539777 -1.14591 -32.2495 9 18 0 0.00 0.00 - no Open
2309 4.821635113354825 -0.466922 -14.0888 5 9 0 0.00 0.00 - no Open
2185 4.876354185075684 -0.608517 -18.1563 3 12 0 0.00 0.00 - no Open
2308 4.992811296007312 -0.634007 -12.6554 4 9 0 0.00 0.00 - no Open
1618 5.080291985761531 -0.423904 -14.2781 3 11 0 0.00 0.00 - no Open
2192 5.526765777704677 -0.773622 -27.4588 10 18 0 0.00 0.00 - no Open
1907 5.587345556395235 -1.06932 -23.1949 10 18 0 0.00 0.00 - no Open
1900 6.0276563258047755 -1.16551 -23.1038 12 18 0 0.00 0.00 - no Open
2045 6.765470282494746 -0.997788 -28.9804 9 17 13 0.81 0.60 - no Open
2296 53.37221182616406 -0.768685 -18.1179 5 9 0 0.00 0.00 - no Open
2304 53.608919967315394 -0.613 -13.1708 4 12 0 0.00 0.00 - no Open
1612 4.381117185751849 -0.420336 -15.5392 1 11 0 0.00 0.00 - yes Open
1625 4.821350123725459 -0.445194 -13.9155 5 11 0 0.00 0.00 - yes Open
2302 4.895388359595507 -0.519003 -17.9461 4 10 0 0.00 0.00 - yes Open
1912 5.039316267359537 -1.00483 -25.7535 8 16 0 0.00 0.00 - yes Open
1616 5.170738448666141 -0.422858 -10.4347 0 11 0 0.00 0.00 - yes Open
2172 5.3390756881795856 -0.975344 -21.3145 8 18 0 0.00 0.00 - yes Open
1919 5.434257203153248 -1.09856 -22.2045 10 17 0 0.00 0.00 - yes Open
2174 5.511764687442145 -0.625939 -16.7655 2 11 0 0.00 0.00 - yes Open
1902 5.630567537053237 -0.92003 -21.9412 6 12 0 0.00 0.00 - yes Open
1623 5.8288885845573475 -0.638187 -15.9081 2 12 0 0.00 0.00 - yes Open
1923 5.864979229746702 -1.23435 -27.3576 12 17 0 0.00 0.00 - yes Open
2194 5.927566468026702 -0.680355 -17.2449 3 12 0 0.00 0.00 - yes Open
2051 6.053396497266249 -0.901968 -27.7205 13 14 11 0.69 0.30 - yes Open
1624 6.070137468765826 -0.518873 -14.9005 1 12 0 0.00 0.00 - yes Open
2043 6.381612065861738 -0.970733 -27.2792 13 15 12 0.75 0.30 - yes Open
1622 6.3893982269164225 -0.355082 -10.5073 3 13 0 0.00 0.00 - yes Open
2190 6.417768834844766 -0.578027 -15.5097 1 11 0 0.00 0.00 - yes Open
2176 6.478739717944036 -0.743138 -17.1921 6 12 0 0.00 0.00 - yes Open
1905 6.617086504604854 -0.930072 -22.4767 3 17 0 0.00 0.00 - yes Open
1614 6.680624418554426 -0.441025 -13.9479 2 11 0 0.00 0.00 - yes Open
2175 6.731892497332459 -0.92112 -21.9881 6 20 0 0.00 0.00 - yes Open
2189 6.824542230227839 -0.585717 -17.4599 3 11 0 0.00 0.00 - yes Open
1901 6.896311313757925 -1.21307 -35.0679 9 16 0 0.00 0.00 - yes Open
2044 6.989994764864935 -0.873434 -21.1262 12 17 12 0.75 0.30 - yes Open
2180 7.277461634943313 -0.784717 -18.3466 7 18 0 0.00 0.00 - yes Open
2056 7.360889702423946 -0.86958 -24.9811 10 17 14 0.88 0.40 - yes Open
2179 7.524279351170433 -0.831906 -20.0475 5 18 0 0.00 0.00 - yes Open
2054 7.531424713619112 -0.60093 -16.7342 9 13 9 0.56 0.30 - yes Open
1915 7.577789854350557 -1.0176 -31.1107 10 18 0 0.00 0.00 - yes Open
2173 7.706817383927939 -0.727578 -17.7891 6 18 0 0.00 0.00 - yes Open
1910 7.7422434891012255 -0.747677 -17.1323 5 10 0 0.00 0.00 - yes Open
2177 7.777516316882465 -0.709844 -20.5324 2 11 0 0.00 0.00 - yes Open
2167 7.778937801091088 -0.911586 -19.6782 9 17 0 0.00 0.00 - yes Open
2052 7.893269672952159 -0.789502 -20.4165 10 15 11 0.69 0.30 - yes Open
2058 7.985070798594231 -0.649554 -16.3589 8 11 8 0.50 0.10 - yes Open
1925 8.216376632798024 -0.856888 -21.676 7 14 0 0.00 0.00 - yes Open
2050 8.298165168354142 -0.604852 -18.0022 10 14 11 0.69 0.30 - yes Open
2055 8.351718263584827 -1.00382 -23.418 11 17 14 0.88 0.30 - yes Open
1904 8.392795366508452 -1.14281 -27.0962 11 19 0 0.00 0.00 - yes Open
2049 8.50326544012737 -0.842452 -22.9939 11 17 14 0.88 0.30 - yes Open
2048 8.534426270037601 -0.899195 -20.3356 5 14 11 0.69 0.20 - yes Open
1914 8.776662557546942 -0.676322 -16.2686 8 11 0 0.00 0.00 - yes Open
2183 8.858923698986347 -0.943085 -28.9986 9 18 0 0.00 0.00 - yes Open
2188 9.770272359686498 -0.932798 -23.2246 6 20 0 0.00 0.00 - yes Open
2170 10.622870869816254 -0.673838 -17.7764 4 9 0 0.00 0.00 - yes Open
2168 10.7215026329293 -0.733978 -16.0802 5 9 0 0.00 0.00 - yes Open
1911 10.800565018739348 -0.910835 -17.4623 9 19 0 0.00 0.00 - yes Open
2186 10.903523465675665 -0.625086 -11.6832 4 9 0 0.00 0.00 - yes Open
1903 11.45263128079415 -1.18063 -24.7856 6 16 0 0.00 0.00 - yes Open
1619 11.997765083215386 -0.917391 -10.8345 8 12 0 0.00 0.00 - yes Open
2310 54.21448333961681 -0.601286 -19.4645 4 9 0 0.00 0.00 - yes Open
1626 55.50862101148109 -0.413237 -12.1913 5 10 0 0.00 0.00 - yes Open
2193 55.517547521145445 -0.586899 -17.363 5 11 0 0.00 0.00 - yes Open
2301 55.7661778842633 -0.49066 -13.789 2 13 0 0.00 0.00 - yes Open
1909 56.09643293950211 -0.904205 -25.7943 5 17 0 0.00 0.00 - yes Open
1921 56.47377227959744 -0.881143 -19.9215 6 14 0 0.00 0.00 - yes Open
1926 56.99425094435762 -0.860193 -22.2351 8 16 0 0.00 0.00 - yes Open
2046 57.15758523563273 -0.585745 -18.2629 9 12 9 0.56 0.30 - yes Open
1899 57.36146928856934 -1.12834 -24.0899 10 19 0 0.00 0.00 - yes Open
2182 57.46344588621467 -0.565604 -13.264 4 12 0 0.00 0.00 - yes Open
2047 57.5806876475554 -0.940515 -26.7888 9 15 12 0.75 0.20 - yes Open
1615 57.64718609792982 -0.744894 -8.42519 8 13 0 0.00 0.00 - yes Open
2171 57.6608514892545 -0.899245 -15.683 5 20 0 0.00 0.00 - yes Open
2187 58.26291205848199 -0.912993 -17.7227 7 18 0 0.00 0.00 - yes Open
1906 58.642921260641714 -0.985976 -23.9788 6 18 0 0.00 0.00 - yes Open
2053 58.86113337631804 -0.785136 -18.6854 6 16 13 0.81 0.50 - yes Open
1913 59.112535843240906 -0.965189 -26.9438 10 16 0 0.00 0.00 - yes Open
2178 59.36125798232092 -0.586059 -16.3091 3 6 0 0.00 0.00 - yes Open
2057 60.457646134284644 -0.689406 -22.7495 6 16 13 0.81 0.30 - yes Current
1620 60.51952587858305 -0.51152 -4.03035 9 13 0 0.00 0.00 - yes Open
2184 60.85739675829807 -0.893116 -19.7937 7 18 0 0.00 0.00 - yes Open
1611 62.220539312170175 -0.850582 -2.60119 7 13 0 0.00 0.00 - yes Open
1918 63.51969998764817 -0.921725 -20.9104 10 12 0 0.00 0.00 - yes Open
2169 66.93323580402036 -0.656899 -22.0354 9 15 0 0.00 0.00 - yes Open

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
⚠ Not yet computed
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.