FAIRMol

NMT-TY0959

Pose ID 21712 Compound 550 Pose 1196

DB Docking_panel_21Docking pose analysis is being read from this database.
Molecular metrics status: queued
Pose metrics recompute is queued in the background.
Metrics cached · SASA missing
T11
Silent information regulator 2-related protein 1 (SIR2RP1 / sirtuin-like deacetylase) Leishmania infantum
Ligand NMT-TY0959
PDB5OL0

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Reject No SASA yet
Likely artefact or unreliable pose
Binding strong Geometry medium Native strong SASA missing
Strain ΔE
39.5 kcal/mol
Protein clashes
3
Internal clashes
3
Native overlap
contact recall 0.72, Jaccard 0.57, H-bond role recall 0.20
Burial
100%
Reason: no major geometry red flags detected
3 protein-contact clashes 3 intramolecular clashes

Interaction summary

HB 6 HY 24 PI 4 CLASH 3
Final rank5.900Score-26.281
Inter norm-0.963Intra norm-0.011
Top1000noExcludedno
Contacts18H-bonds4
Artifact reasongeometry warning; 11 clashes; 9 protein contact clashes; high strain Δ 39.5
Residues
ALA40 ASN125 GLN124 GLU192 GLY191 GLY39 HIS144 HIS222 ILE126 LEU194 PHE189 PHE190 PHE51 PHE74 THR71 VAL187 VAL188 VAL221

Protein summary

287 residues
Protein targetT11Atoms4391
Residues287Chains1
Residue summaryLEU:627; ARG:432; VAL:384; GLU:316; PHE:300; ILE:285; ALA:260; PRO:238; HIS:187; ASP:157; LYS:154; SER:154; THR:154; GLY:147; ASN:140; TYR:126

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: permissive.
Name5OL0Contacts18
PoseOpen native poseHB0
IFP residues
ASN193 GLN220 GLU192 GLY191 HIS144 HIS222 ILE126 LEU194 LEU226 PHE189 PHE190 PHE199 PHE74 PRO223 THR71 VAL187 VAL188 VAL221
Current overlap13Native recall0.72
Jaccard0.57RMSD-
HB strict1Strict recall0.20
HB same residue+role1HB role recall0.20
HB same residue1HB residue recall0.25

HB · H-bonds

Mode: permissive. Count shows atom-level H-bonds; unique residues in summary: 0.

PI · π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
976 3.725963286202594 -1.30957 -33.6603 12 15 0 0.00 0.00 - no Open
2327 4.096964183561333 -1.05228 -30.182 4 18 0 0.00 0.00 - no Open
3072 4.4521658121106125 -0.766941 -20.0969 5 16 0 0.00 0.00 - no Open
744 4.523667717252291 -1.25191 -32.6226 7 21 0 0.00 0.00 - no Open
2968 4.5596903350546825 -1.0015 -27.2048 10 16 0 0.00 0.00 - no Open
784 4.630887405506052 -0.901881 -22.2926 2 13 1 0.06 0.00 - no Open
3070 4.832518365754668 -0.893622 -24.2732 6 18 0 0.00 0.00 - no Open
1245 4.890463367622139 -1.00246 -29.0104 9 15 0 0.00 0.00 - no Open
1539 4.911094108151013 -0.728068 -18.0762 6 9 0 0.00 0.00 - no Open
789 5.131472184269517 -0.926251 -24.8853 2 13 1 0.06 0.00 - no Open
787 5.548281609924738 -0.852751 -21.3044 1 12 1 0.06 0.00 - no Open
2966 5.7005705101682045 -0.889641 -22.6382 7 15 0 0.00 0.00 - no Open
1196 5.899769271662714 -0.962721 -26.2813 4 18 13 0.72 0.20 - no Current
1542 6.3127925535131055 -0.843132 -22.6989 8 16 0 0.00 0.00 - no Open
861 6.377997963385409 -0.94121 -26.6787 3 15 0 0.00 0.00 - no Open
980 6.551701347950366 -1.1173 -25.4413 9 15 0 0.00 0.00 - no Open
786 6.808597452705019 -0.914363 -21.2318 2 13 1 0.06 0.00 - no Open
2964 6.886427946353083 -0.856264 -23.0552 5 17 0 0.00 0.00 - no Open
1010 7.408671293611844 -1.12176 -28.2281 10 20 0 0.00 0.00 - no Open
992 7.41031777306122 -0.9552 -20.4555 4 16 0 0.00 0.00 - no Open
3069 5.08222974628391 -0.901066 -24.1454 6 15 0 0.00 0.00 - yes Open
1199 5.3054315442508475 -0.875079 -22.9236 3 20 12 0.67 0.20 - yes Open
788 5.595288997168039 -0.880209 -24.3479 2 13 1 0.06 0.00 - yes Open
2963 5.664947554071436 -1.02855 -27.026 8 17 0 0.00 0.00 - yes Open
1541 5.975886762699564 -0.76536 -19.0371 6 13 0 0.00 0.00 - yes Open
1011 6.101892322098901 -1.08066 -26.4646 8 16 0 0.00 0.00 - yes Open
1198 6.292092672987181 -0.930634 -26.173 10 14 14 0.78 0.60 - yes Open
2323 6.313896537521306 -0.894306 -22.1695 2 15 0 0.00 0.00 - yes Open
2326 6.514535612975343 -0.987141 -21.3955 4 17 0 0.00 0.00 - yes Open
743 6.7538176312691025 -1.19073 -29.8295 8 20 0 0.00 0.00 - yes Open
1538 6.857035124312529 -0.776205 -17.5182 6 14 0 0.00 0.00 - yes Open
1194 7.113236760855778 -0.866426 -22.0336 3 15 12 0.67 0.20 - yes Open
2965 7.552429621926622 -0.914149 -25.3534 9 16 0 0.00 0.00 - yes Open
1537 7.650336675401466 -0.796181 -20.743 6 14 0 0.00 0.00 - yes Open
1543 7.652962705554535 -0.850128 -21.98 8 14 0 0.00 0.00 - yes Open
1009 7.827333489442097 -1.0222 -26.8251 7 24 0 0.00 0.00 - yes Open
785 7.992331552127431 -0.805383 -20.8258 3 13 1 0.06 0.00 - yes Open
1195 8.088001666503295 -0.949734 -24.1142 8 15 13 0.72 0.80 - yes Open
745 8.088052672982203 -1.21569 -31.7738 9 20 0 0.00 0.00 - yes Open
978 8.239652498200421 -1.22448 -31.8995 9 15 0 0.00 0.00 - yes Open
3073 8.245653336522212 -0.924839 -25.7132 8 13 0 0.00 0.00 - yes Open
979 8.31593892914662 -1.21839 -28.3093 10 17 0 0.00 0.00 - yes Open
1013 8.470703369671075 -1.0732 -28.8909 14 20 0 0.00 0.00 - yes Open
1244 8.490601006534428 -0.960305 -25.4464 8 18 0 0.00 0.00 - yes Open
1193 8.505495413417659 -0.902642 -22.8728 8 15 14 0.78 0.60 - yes Open
1197 8.642741608851852 -1.08116 -27.9486 7 17 12 0.67 0.20 - yes Open
1008 8.76423981282301 -0.935135 -25.7853 9 21 0 0.00 0.00 - yes Open
2325 8.796722728576952 -1.07172 -28.3571 5 20 0 0.00 0.00 - yes Open
1540 8.925783600326923 -0.742464 -15.947 8 15 0 0.00 0.00 - yes Open
746 8.968390532111323 -1.17375 -31.7016 10 20 0 0.00 0.00 - yes Open
3071 8.99057834845964 -0.784302 -15.8048 5 12 0 0.00 0.00 - yes Open
2967 9.170157968850281 -0.976077 -27.002 9 18 0 0.00 0.00 - yes Open
2328 9.278822190931775 -0.959989 -25.8197 7 10 0 0.00 0.00 - yes Open
862 9.295844880558743 -1.14475 -30.9484 7 15 0 0.00 0.00 - yes Open
993 9.45080372061048 -0.770327 -18.0331 3 17 0 0.00 0.00 - yes Open
977 9.585854727229679 -1.22911 -31.2395 6 17 0 0.00 0.00 - yes Open
1246 9.610255930126277 -1.00961 -29.4309 9 12 0 0.00 0.00 - yes Open
3068 10.121919958869 -0.80158 -21.1804 8 16 0 0.00 0.00 - yes Open
1012 10.16499353802062 -1.1408 -30.4082 8 22 0 0.00 0.00 - yes Open
3074 10.225125480925996 -0.816289 -20.1152 8 14 0 0.00 0.00 - yes Open
863 10.588319598395609 -1.01589 -29.1184 6 16 0 0.00 0.00 - yes Open
747 10.644785406466566 -1.0815 -28.7503 8 21 0 0.00 0.00 - yes Open
2324 10.987677217752333 -0.897714 -26.3186 6 17 0 0.00 0.00 - yes Open
991 11.328862090659927 -0.958753 -24.3683 6 21 0 0.00 0.00 - yes Open
990 11.388062374646408 -0.983958 -24.6706 6 21 0 0.00 0.00 - yes Open
864 11.448545983706115 -1.05756 -28.2634 6 14 0 0.00 0.00 - yes Open
749 12.003813205196298 -1.04534 -29.1571 11 21 0 0.00 0.00 - yes Open
748 13.299026769487188 -1.26034 -34.3636 9 22 0 0.00 0.00 - yes Open

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
⚠ Not yet computed
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.