Docking pose detail

Molecular metrics status: done

Cached molecular metrics are available for this pose.

Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.

Strict H-bonds Permissive H-bonds

Molecular report

Full metrics ↗

Reject Multiple quality flags — this pose should be deprioritised or discarded.

✓ Excellent LE (-0.564 kcal/mol/HA) ✓ Good fit quality (FQ -5.12) ✗ Very high strain energy (27.8 kcal/mol) ✗ No H-bonds detected ✗ Geometry warnings ✗ Protein contact clashes ℹ SASA not computed

Score

-14.087

kcal/mol

-0.564

kcal/mol/HA

Fit Quality

-5.12

FQ (Leeson)

HAC

heavy atoms

359

LogP

3.97

cLogP

Strain ΔE

27.8 kcal/mol

SASA buried

computing…

Overall: Promising but geometrically suspicious

Binding evidence: strong

Native-like contacts: strong

Ligand efficiency: excellent

Geometry reliability: low

Reason: geometry warning, clashes, protein contact clashes, strain 27.8 kcal/mol

Interaction summary

Collapsible panels

H-bonds 0 Hydrophobic 24 π–π 3 Clashes 10 Severe clashes 0

Final rank	5.786410226721449	Score	-14.0874
Inter norm	-0.828612	Intra norm	0.265115
Top1000	no	Excluded	no
Contacts	15	H-bonds	0
Artifact reason	geometry warning; 11 clashes; 10 protein contact clashes; high strain Δ 32.0
Residues	A:ALA34;A:ARG100;A:ARG59;A:ASP54;A:ILE47;A:LEU90;A:LEU97;A:MET55;A:NDP301;A:PHE58;A:PHE94;A:PRO91;A:TYR57;A:VAL32;A:VAL33

Protein summary

223 residues

Protein target	T06	Atoms	3452
Residues	223	Chains	1
Residue summary	ARG:408; VAL:352; LYS:308; LEU:304; PRO:238; ILE:209; GLU:195; THR:182; SER:176; ALA:160; PHE:140; ASN:126; GLY:126; ASP:108; GLN:85; NDP:74

Native ligand reference

★ reference

Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.

Name	8RHT	Contacts	21
Pose	Open native pose	H-bonds	6
IFP residues	A:ALA34; A:ASP54; A:HIS182; A:ILE160; A:ILE47; A:LEU90; A:LEU97; A:MET55; A:NDP301; A:PHE233; A:PHE58; A:PHE94; A:PRO91; A:SER89; A:THR184; A:THR86; A:TRP49; A:TYR166; A:TYR57; A:VAL32; A:VAL33
Current overlap	13	Native recall	0.62
Jaccard	0.57	RMSD	-
H-bond strict	0	Strict recall	0.00
H-bond same residue+role	0	Role recall	0.00
H-bond same residue	0	Residue recall	0.00

Hydrogen bonds

No hydrogen bonds detected for this pose.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

Pose	Final rank	Inter norm	Score	HB	Contacts	Native overlap	Native recall	RMSD	Excluded
1308	4.294784451215376	-0.993048	-20.5132	2	12	0	0.00	-	no	Open
1234	5.392410609128256	-0.893066	-19.916	0	17	14	0.67	-	no	Open
1235	5.786410226721449	-0.828612	-14.0874	0	15	13	0.62	-	no	Current
1236	5.010771992847386	-0.919501	-19.8673	1	16	14	0.67	-	yes	Open
1307	5.345187284695714	-0.870757	-16.8085	2	14	0	0.00	-	yes	Open
1309	7.816199671237616	-1.08419	-21.9006	2	18	0	0.00	-	yes	Open
1233	55.56768730867148	-0.792945	-14.2809	2	16	14	0.67	-	yes	Open
1310	58.34985574887908	-1.20406	-26.4619	2	18	0	0.00	-	yes	Open

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.

✓ Metrics available

Scoring & efficiency

Docking score -14.087kcal/mol

Ligand efficiency (LE) -0.5635kcal/mol/HA

Score / heavy atom count

Fit quality (FQ) -5.123

LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe

Heavy atom count 25HA

Physicochemical properties

Molecular weight 359.5Da

Lipinski: ≤ 500 Da

LogP (cLogP) 3.97

Lipinski: ≤ 5

Rotatable bonds 5

Conformational strain (MMFF94s)

Strain energy (ΔE) 27.75kcal/mol

< 5 good · 5–10 marginal · > 10 problematic

Docked FF energy 37.50kcal/mol

Minimised FF energy 9.74kcal/mol

SASA & burial (FreeSASA)

not yet run

SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.

Z56835260