Docking pose detail

Molecular metrics status: done

Cached molecular metrics are available for this pose.

Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.

Strict H-bonds Permissive H-bonds

Molecular report

Full metrics ↗

Weak Marginal quality. Consider only alongside better-scoring alternatives.

✓ Excellent LE (-0.491 kcal/mol/HA) ✓ Good fit quality (FQ -4.40) ✗ High strain energy (14.7 kcal/mol) ✗ No H-bonds detected ✗ Geometry warnings ℹ SASA not computed

Score

-11.793

kcal/mol

-0.491

kcal/mol/HA

Fit Quality

-4.40

FQ (Leeson)

HAC

heavy atoms

322

LogP

3.19

cLogP

Strain ΔE

14.7 kcal/mol

SASA buried

computing…

Overall: Promising but geometrically suspicious

Binding evidence: strong

Native-like contacts: strong

Ligand efficiency: excellent

Geometry reliability: low

Reason: geometry warning, clashes, strain 14.7 kcal/mol

Interaction summary

Collapsible panels

H-bonds 0 Hydrophobic 13 π–π 3 Clashes 7 Severe clashes 1

Final rank	5.085833785511492	Score	-11.7926
Inter norm	-0.6022	Intra norm	0.11084
Top1000	no	Excluded	yes
Contacts	11	H-bonds	0
Artifact reason	excluded; geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 18.0
Residues	A:ARG17;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:MET233;A:NDP302;A:PHE113;A:TYR191;A:TYR194;A:VAL230

Protein summary

308 residues

Protein target	T04	Atoms	4210
Residues	308	Chains	3
Residue summary	LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108

Native ligand reference

★ reference

Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.

Name	7PXX	Contacts	19
Pose	Open native pose	H-bonds	8
IFP residues	A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287
Current overlap	11	Native recall	0.58
Jaccard	0.58	RMSD	-
H-bond strict	0	Strict recall	0.00
H-bond same residue+role	0	Role recall	0.00
H-bond same residue	0	Residue recall	0.00

Hydrogen bonds

No hydrogen bonds detected for this pose.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

Pose	Final rank	Inter norm	Score	HB	Contacts	Native overlap	Native recall	HB role recall	RMSD	Excluded
1308	3.5581947734547623	-0.955682	-39.7339	0	15	14	0.74	0.00	-	no	Open
1309	3.8910946977320826	-0.621543	-11.3831	0	12	12	0.63	0.00	-	no	Open
1304	3.8570512520581826	-0.920966	-17.8731	3	12	12	0.63	0.00	-	yes	Open
1310	4.340372053343102	-0.887248	-17.065	3	12	12	0.63	0.00	-	yes	Open
1306	4.926435324388029	-0.960189	-18.1461	2	12	12	0.63	0.00	-	yes	Open
1303	5.085833785511492	-0.6022	-11.7926	0	11	11	0.58	0.00	-	yes	Current
1305	8.176416929600043	-0.63778	-5.75832	0	12	12	0.63	0.00	-	yes	Open
1307	11.393465178559207	-0.729131	-29.3745	1	14	14	0.74	0.20	-	yes	Open

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.

✓ Metrics available

Scoring & efficiency

Docking score -11.793kcal/mol

Ligand efficiency (LE) -0.4914kcal/mol/HA

Score / heavy atom count

Fit quality (FQ) -4.404

LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe

Heavy atom count 24HA

Physicochemical properties

Molecular weight 322.4Da

Lipinski: ≤ 500 Da

LogP (cLogP) 3.19

Lipinski: ≤ 5

Rotatable bonds 5

Conformational strain (MMFF94s)

Strain energy (ΔE) 14.72kcal/mol

< 5 good · 5–10 marginal · > 10 problematic

Docked FF energy 53.86kcal/mol

Minimised FF energy 39.13kcal/mol

SASA & burial (FreeSASA)

not yet run

SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.

Z266758736