Docking pose detail

Molecular metrics status: done

Cached molecular metrics are available for this pose.

Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.

Strict H-bonds Permissive H-bonds

Molecular report

Full metrics ↗

Weak Marginal quality. Consider only alongside better-scoring alternatives.

✓ Excellent LE (-0.860 kcal/mol/HA) ✓ Good fit quality (FQ -7.71) ✗ High strain energy (18.6 kcal/mol) ✗ Geometry warnings ℹ SASA not computed

Score

-20.636

kcal/mol

-0.860

kcal/mol/HA

Fit Quality

-7.71

FQ (Leeson)

HAC

heavy atoms

317

LogP

3.05

cLogP

Strain ΔE

18.6 kcal/mol

SASA buried

computing…

Overall: Promising but geometrically suspicious

Binding evidence: strong

Native-like contacts: mixed

Ligand efficiency: excellent

Geometry reliability: low

Reason: geometry warning, clashes, strain 18.6 kcal/mol

Interaction summary

Collapsible panels

H-bonds 1 Hydrophobic 12 π–π 2 Clashes 4 Severe clashes 2

Final rank	6.447521748035415	Score	-20.6355
Inter norm	-0.894606	Intra norm	0.0347952
Top1000	no	Excluded	yes
Contacts	10	H-bonds	1
Artifact reason	excluded; geometry warning; 13 clashes; 2 protein clashes; high strain Δ 21.7
Residues	A:ARG17;A:ASP181;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:NDP302;A:PHE113;A:TYR191;A:TYR194

Protein summary

308 residues

Protein target	T04	Atoms	4210
Residues	308	Chains	3
Residue summary	LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108

Native ligand reference

★ reference

Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.

Name	7PXX	Contacts	19
Pose	Open native pose	H-bonds	8
IFP residues	A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287
Current overlap	10	Native recall	0.53
Jaccard	0.53	RMSD	-
H-bond strict	0	Strict recall	0.00
H-bond same residue+role	0	Role recall	0.00
H-bond same residue	1	Residue recall	0.20

Hydrogen bonds

Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

Pose	Final rank	Inter norm	Score	HB	Contacts	Native overlap	Native recall	RMSD	Excluded
1270	3.308032521728773	-0.939053	-19.2529	0	11	11	0.58	-	no	Open
1268	3.435623949302341	-1.03876	-22.9205	4	11	11	0.58	-	no	Open
1266	4.631922476672726	-0.962688	-20.6731	2	10	10	0.53	-	yes	Open
1269	5.526115040726339	-0.932609	-23.5794	0	9	9	0.47	-	yes	Open
1267	5.864403683102621	-0.804254	-19.6941	1	9	9	0.47	-	yes	Open
1265	6.447521748035415	-0.894606	-20.6355	1	10	10	0.53	-	yes	Current

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.

✓ Metrics available

Scoring & efficiency

Docking score -20.636kcal/mol

Ligand efficiency (LE) -0.8598kcal/mol/HA

Score / heavy atom count

Fit quality (FQ) -7.706

LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe

Heavy atom count 24HA

Physicochemical properties

Molecular weight 317.4Da

Lipinski: ≤ 500 Da

LogP (cLogP) 3.05

Lipinski: ≤ 5

Rotatable bonds 3

Conformational strain (MMFF94s)

Strain energy (ΔE) 18.63kcal/mol

< 5 good · 5–10 marginal · > 10 problematic

Docked FF energy 158.27kcal/mol

Minimised FF energy 139.64kcal/mol

SASA & burial (FreeSASA)

not yet run

SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.

Z2694498001