Molecular metrics status: done
RDKit SASA-based burial metrics are cached.
SASA cached
3D complex viewer
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak
SASA cached
Weak or marginal quality
Binding strong
Geometry medium
Native mixed
SASA done
Strain ΔE
29.8 kcal/mol
Protein clashes
3
Internal clashes
3
Native overlap
contact recall 0.50, Jaccard 0.39, H-bond role recall 0.20
Reason: no major geometry red flags detected
3 protein-contact clashes
3 intramolecular clashes
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-1.199 kcal/mol/HA)
✓ Good fit quality (FQ -10.22)
✓ Good H-bonds (5 bonds)
✓ Deep burial (93% SASA buried)
✓ Lipophilic contacts well-matched (65%)
✗ High strain energy (29.8 kcal/mol)
✗ Geometry warnings
✗ Internal clashes (8)
Score
-25.171
kcal/mol
LE
-1.199
kcal/mol/HA
Fit Quality
-10.22
FQ (Leeson)
HAC
21
heavy atoms
MW
327
Da
LogP
0.46
cLogP
Interaction summary
HB 5
HY 15
PI 3
CLASH 3
Interaction summary
HB 5
HY 15
PI 3
CLASH 3
| Final rank | 2.239 | Score | -25.171 |
|---|---|---|---|
| Inter norm | -1.182 | Intra norm | -0.017 |
| Top1000 | no | Excluded | no |
| Contacts | 14 | H-bonds | 5 |
| Artifact reason | geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 29.8 | ||
| Residues |
ALA40
ASN125
GLN124
GLY39
HIS144
ILE126
LEU194
PHE189
PHE190
PHE51
PHE74
VAL187
VAL188
VAL221
| ||
Protein summary
287 residues
| Protein target | T11 | Atoms | 4391 |
|---|---|---|---|
| Residues | 287 | Chains | 1 |
| Residue summary | LEU:627; ARG:432; VAL:384; GLU:316; PHE:300; ILE:285; ALA:260; PRO:238; HIS:187; ASP:157; LYS:154; SER:154; THR:154; GLY:147; ASN:140; TYR:126 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5OL0 | Contacts | 18 |
|---|---|---|---|
| Pose | Open native pose | HB | 0 |
| IFP residues |
ASN193
GLN220
GLU192
GLY191
HIS144
HIS222
ILE126
LEU194
LEU226
PHE189
PHE190
PHE199
PHE74
PRO223
THR71
VAL187
VAL188
VAL221
| ||
| Current overlap | 9 | Native recall | 0.50 |
| Jaccard | 0.39 | RMSD | - |
| HB strict | 1 | Strict recall | 0.20 |
| HB same residue+role | 1 | HB role recall | 0.20 |
| HB same residue | 1 | HB residue recall | 0.25 |
HB · H-bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
HY · Hydrophobic contacts
CLASH · Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | CT | CT overlap | CT recall | HB role rec. | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 275 | 1.2800102035544119 | -1.07992 | -23.2762 | 7 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 398 | 1.7423448159409054 | -1.17816 | -26.2298 | 8 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 334 | 2.168932137414599 | -1.4266 | -30.2851 | 10 | 14 | 0 | 0.00 | 0.00 | - | no | Open |
| 273 | 2.238615620155472 | -1.18153 | -25.1714 | 5 | 14 | 9 | 0.50 | 0.20 | - | no | Current |
| 371 | 2.6107657595377027 | -1.11929 | -23.9803 | 8 | 11 | 0 | 0.00 | 0.00 | - | no | Open |
| 347 | 2.6839312495860876 | -1.36596 | -29.3412 | 8 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 335 | 2.984846058218942 | -1.34842 | -28.8321 | 8 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 255 | 3.4499319879559054 | -1.26631 | -30.5607 | 10 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 242 | 4.285080726682143 | -1.2932 | -28.7348 | 10 | 11 | 0 | 0.00 | 0.00 | - | no | Open |
| 228 | 4.729656743975371 | -1.23678 | -27.4648 | 11 | 13 | 0 | 0.00 | 0.00 | - | no | Open |
Molecular metrics
RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-25.171kcal/mol
Ligand efficiency (LE)
-1.1986kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-10.224
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
21HA
Physicochemical properties
Molecular weight
327.4Da
Lipinski: ≤ 500 Da
LogP (cLogP)
0.46
Lipinski: ≤ 5
Rotatable bonds
6
Conformational strain (MMFF94s)
Strain energy (ΔE)
29.78kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
-60.04kcal/mol
Minimised FF energy
-89.82kcal/mol
SASA & burial
✓ computed
SASA (unbound)
518.8Ų
Total solvent-accessible surface area of free ligand
BSA total
484.7Ų
Buried surface area upon binding
BSA apolar
313.1Ų
Hydrophobic contacts buried
BSA polar
171.5Ų
Polar contacts buried
Fraction buried
93.4%
> 60 % indicates good pocket engagement
Lipophilic contact ratio
64.6%
BSA apolar / BSA total — high = hydrophobic driver
Δ Non-polar SASA
-1768.5Ų
SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.
Receptor non-polar SASA
2380.0Ų
Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)
Complex non-polar SASA
951.8Ų
Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)