Docking pose detail

Molecular metrics status: done

RDKit SASA-based burial metrics are cached.

SASA cached

T10

L. infantum R5P L. infantum

Ligand Z237649744

3D complex viewer

Strict H-bonds Permissive H-bonds

Viewer legend

Protein receptor

Pocket residues

Cofactor context

Docked ligand

Overall assessment

Weak SASA cached

Weak or marginal quality

Binding strong Geometry medium Native strong SASA done

Strain ΔE

21.2 kcal/mol

Protein clashes

Internal clashes

Native overlap

contact recall 0.88, Jaccard 0.83, H-bond role recall 0.27

Burial

74%

Hydrophobic fit

80%

Reason: no major geometry red flags detected

3 protein-contact clashes 3 intramolecular clashes 44% of hydrophobic surface appears solvent-exposed (7/16 atoms). Partial exposure is common but may limit selectivity and membrane permeability.

EcoTox / ADMET GDS: UNSAFE UL GreenDrugScore ML model

ECOscore

0.282

aquatic tox · BCF · biodeg.

GDS₃ (3-block)

0.430

ADMET + ECO + DL

ADMETscore (GDS)

0.470

absorption · distr. · metab.

DLscore

0.446

drug-likeness

GDS₂ (2-block)

0.423

ECO + ADMET

P(SAFE)

11.6%

GDS classification

ADMET alerts (in-silico)

hERG Medium Ames Clear DILI Low

Molecular report

Full metrics ↗

Weak Marginal quality. Consider only alongside better-scoring alternatives.

✓ Excellent LE (-1.006 kcal/mol/HA) ✓ Good fit quality (FQ -8.88) ✓ Strong H-bond network (6 bonds) ✓ Deep burial (74% SASA buried) ✓ Lipophilic contacts well-matched (80%) ✗ High strain energy (21.2 kcal/mol) ✗ Geometry warnings ✗ Many internal clashes (10)

Score

-23.149

kcal/mol

-1.006

kcal/mol/HA

Fit Quality

-8.88

FQ (Leeson)

HAC

heavy atoms

393

LogP

3.81

cLogP

Final rank

3.6067

rank score

Inter norm

-1.086

normalised

Contacts

H-bonds 8

Strain ΔE

21.2 kcal/mol

SASA buried

74%

Lipo contact

80% BSA apolar/total

SASA unbound

562 Å²

Apolar buried

333 Å²

Interaction summary

HBA 6 HY 2 PI 1 CLASH 3

HBD/HBA · H-bonds (geometric)

HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: strict. Residues: 3.

PI · π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference

Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.

Name	6FXW	Contacts	17
Pose	Open native pose	HB	0
IFP residues	ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49
Current overlap	15	Native recall	0.88
Jaccard	0.83	RMSD	-
HB strict	5	Strict recall	0.38
HB same residue+role	3	HB role recall	0.27
HB same residue	4	HB residue recall	0.36

Protein summary

155 residues

Protein target	T10	Atoms	4590
Residues	155	Chains	1
Residue summary	ILE:494; ARG:384; ALA:360; VAL:352; LEU:304; GLU:300; THR:280; MET:272; LYS:220; ASP:216; TYR:210; HIS:204; GLY:182; SER:176; GLN:170; ASN:140

All stored poses for this docking hit

Pose	Final rank	Inter norm	Score	HB	CT	CT overlap	CT recall	HB role rec.	RMSD	Excluded
646	1.3775436429793968	-1.13672	-23.465	4	15	0	0.00	0.00	-	no	Open
664	3.606685833965238	-1.08604	-23.1495	8	16	15	0.88	0.27	-	no	Current

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.

✓ Metrics available

Scoring & efficiency

Docking score -23.149kcal/mol

Ligand efficiency (LE) -1.0065kcal/mol/HA

Score / heavy atom count

Fit quality (FQ) -8.883

LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe

Heavy atom count 23HA

Physicochemical properties

Molecular weight 393.3Da

Lipinski: ≤ 500 Da

LogP (cLogP) 3.81

Lipinski: ≤ 5

Rotatable bonds 4

Conformational strain (MMFF94s)

Strain energy (ΔE) 21.22kcal/mol

< 5 good · 5–10 marginal · > 10 problematic

Docked FF energy 58.50kcal/mol

Minimised FF energy 37.27kcal/mol

SASA & burial

✓ computed

SASA (unbound) 562.4Å²

Total solvent-accessible surface area of free ligand

BSA total 414.0Å²

Buried surface area upon binding

BSA apolar 333.2Å²

Hydrophobic contacts buried

BSA polar 80.8Å²

Polar contacts buried

Fraction buried 73.6%

> 60 % indicates good pocket engagement

Lipophilic contact ratio 80.5%

BSA apolar / BSA total — high = hydrophobic driver

Δ Non-polar SASA -2205.2Å²

SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.

Receptor non-polar SASA 2417.4Å²

Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)

Complex non-polar SASA 691.3Å²

Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)