FAIRMol

Z363947306

Pose ID 6702 Compound 3476 Pose 606

DB fairmolDocking pose analysis is being read from this database.
Compound detail Protein structures Back to compounds
Molecular metrics status: done
RDKit SASA-based burial metrics are cached.
SASA cached
T10
L. infantum R5P L. infantum
Ligand Z363947306

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Promising SASA cached
Promising and worth follow-up
Binding strong Geometry medium Native strong SASA done
Strain ΔE
10.0 kcal/mol
Protein clashes
3
Internal clashes
3
Native overlap
contact recall 0.71, Jaccard 0.60, H-bond role recall 0.36
Burial
78%
Hydrophobic fit
85%
Reason: no major geometry red flags detected
3 protein-contact clashes 3 intramolecular clashes 53% of hydrophobic surface appears solvent-exposed (10/19 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Molecular report
Full metrics ↗
Promising Reasonable quality metrics. Warrants further investigation.
✓ Excellent LE (-0.960 kcal/mol/HA) ✓ Good fit quality (FQ -8.73) ✓ Strong H-bond network (8 bonds) ✓ Deep burial (78% SASA buried) ✓ Lipophilic contacts well-matched (85%) ✗ Moderate strain (10.0 kcal/mol) ✗ Geometry warnings ✗ Internal clashes (8)
Score
-24.008
kcal/mol
LE
-0.960
kcal/mol/HA
Fit Quality
-8.73
FQ (Leeson)
HAC
25
heavy atoms
MW
354
Da
LogP
4.22
cLogP
Final rank
3.4388
rank score
Inter norm
-0.991
normalised
Contacts
15
H-bonds 9
Strain ΔE
10.0 kcal/mol
SASA buried
78%
Lipo contact
85% BSA apolar/total
SASA unbound
602 Ų
Apolar buried
398 Ų

Interaction summary

HBA 8 HY 4 PI 2 CLASH 3

HBD/HBA · H-bonds (geometric)
HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: strict. Residues: 4.

PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name6FXWContacts17
PoseOpen native poseHB0
IFP residues
ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49
Current overlap12Native recall0.71
Jaccard0.60RMSD-
HB strict6Strict recall0.46
HB same residue+role4HB role recall0.36
HB same residue4HB residue recall0.36

Protein summary

155 residues
Protein targetT10Atoms4590
Residues155Chains1
Residue summaryILE:494; ARG:384; ALA:360; VAL:352; LEU:304; GLU:300; THR:280; MET:272; LYS:220; ASP:216; TYR:210; HIS:204; GLY:182; SER:176; GLN:170; ASN:140

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
606 3.438848219403781 -0.991102 -24.0084 9 15 12 0.71 0.36 - no Current

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
✓ Metrics available

Scoring & efficiency
Docking score -24.008kcal/mol
Ligand efficiency (LE) -0.9603kcal/mol/HA
Score / heavy atom count
Fit quality (FQ) -8.730
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count 25HA

Physicochemical properties
Molecular weight 353.8Da
Lipinski: ≤ 500 Da
LogP (cLogP) 4.22
Lipinski: ≤ 5
Rotatable bonds 3

Conformational strain (MMFF94s)
Strain energy (ΔE) 10.03kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy 22.67kcal/mol
Minimised FF energy 12.64kcal/mol

SASA & burial

✓ computed
SASA (unbound) 602.0Ų
Total solvent-accessible surface area of free ligand
BSA total 467.3Ų
Buried surface area upon binding
BSA apolar 397.5Ų
Hydrophobic contacts buried
BSA polar 69.8Ų
Polar contacts buried
Fraction buried 77.6%
> 60 % indicates good pocket engagement
Lipophilic contact ratio 85.1%
BSA apolar / BSA total — high = hydrophobic driver
Δ Non-polar SASA -2252.3Ų
SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.
Receptor non-polar SASA 2417.4Ų
Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)
Complex non-polar SASA 682.6Ų
Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)