FAIRMol

Z49596752

Pose ID 6622 Compound 2017 Pose 526

DB fairmolDocking pose analysis is being read from this database.
Compound detail Protein structures Back to compounds
Molecular metrics status: done
RDKit SASA-based burial metrics are cached.
SASA cached
T10
L. infantum R5P L. infantum
Ligand Z49596752

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak SASA cached
Promising but geometrically suspicious
Binding strong Geometry low Native strong SASA done
Strain ΔE
31.7 kcal/mol
Protein clashes
6
Internal clashes
6
Native overlap
contact recall 0.82, Jaccard 0.82, H-bond role recall 0.45
Burial
68%
Hydrophobic fit
71%
Reason: 6 internal clashes
6 protein-contact clashes 6 intramolecular clashes 47% of hydrophobic surface appears solvent-exposed (9/19 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Molecular report
Full metrics ↗
Weak Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.947 kcal/mol/HA) ✓ Good fit quality (FQ -9.04) ✓ Strong H-bond network (6 bonds) ✓ Deep burial (68% SASA buried) ✓ Lipophilic contacts well-matched (71%) ✗ Very high strain energy (31.7 kcal/mol) ✗ Geometry warnings ✗ Many internal clashes (11)
Score
-27.475
kcal/mol
LE
-0.947
kcal/mol/HA
Fit Quality
-9.04
FQ (Leeson)
HAC
29
heavy atoms
MW
456
Da
LogP
3.74
cLogP
Final rank
4.1517
rank score
Inter norm
-0.856
normalised
Contacts
14
H-bonds 9
Strain ΔE
31.7 kcal/mol
SASA buried
68%
Lipo contact
71% BSA apolar/total
SASA unbound
661 Ų
Apolar buried
320 Ų

Interaction summary

HBA 6 HY 3 PI 2 CLASH 6

HBD/HBA · H-bonds (geometric)
HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: strict. Residues: 5.

PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name6FXWContacts17
PoseOpen native poseHB0
IFP residues
ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49
Current overlap14Native recall0.82
Jaccard0.82RMSD-
HB strict7Strict recall0.54
HB same residue+role5HB role recall0.45
HB same residue5HB residue recall0.45

Protein summary

155 residues
Protein targetT10Atoms4590
Residues155Chains1
Residue summaryILE:494; ARG:384; ALA:360; VAL:352; LEU:304; GLU:300; THR:280; MET:272; LYS:220; ASP:216; TYR:210; HIS:204; GLY:182; SER:176; GLN:170; ASN:140

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
510 1.2224907479128713 -0.96932 -26.0225 8 14 0 0.00 0.00 - no Open
526 4.15166166876751 -0.85644 -27.4746 9 14 14 0.82 0.45 - no Current

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
✓ Metrics available

Scoring & efficiency
Docking score -27.475kcal/mol
Ligand efficiency (LE) -0.9474kcal/mol/HA
Score / heavy atom count
Fit quality (FQ) -9.044
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count 29HA

Physicochemical properties
Molecular weight 456.4Da
Lipinski: ≤ 500 Da
LogP (cLogP) 3.74
Lipinski: ≤ 5
Rotatable bonds 5

Conformational strain (MMFF94s)
Strain energy (ΔE) 31.72kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy 70.06kcal/mol
Minimised FF energy 38.34kcal/mol

SASA & burial

✓ computed
SASA (unbound) 661.2Ų
Total solvent-accessible surface area of free ligand
BSA total 452.3Ų
Buried surface area upon binding
BSA apolar 320.0Ų
Hydrophobic contacts buried
BSA polar 132.3Ų
Polar contacts buried
Fraction buried 68.4%
> 60 % indicates good pocket engagement
Lipophilic contact ratio 70.8%
BSA apolar / BSA total — high = hydrophobic driver
Δ Non-polar SASA -2197.6Ų
SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.
Receptor non-polar SASA 2417.4Ų
Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)
Complex non-polar SASA 738.2Ų
Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)