Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Reject
Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-0.710 kcal/mol/HA)
✓ Good fit quality (FQ -7.26)
✓ Good H-bonds (3 bonds)
✗ Very high strain energy (21.7 kcal/mol)
✗ Geometry warnings
✗ Protein contact clashes
ℹ SASA not computed
Score
-26.253
kcal/mol
LE
-0.710
kcal/mol/HA
Fit Quality
-7.26
FQ (Leeson)
HAC
37
heavy atoms
MW
552
Da
LogP
5.58
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, protein contact clashes, strain 21.7 kcal/mol
Interaction summary
Collapsible panels
H-bonds 3
Hydrophobic 24
π–π 4
Clashes 11
Severe clashes 0
| Final rank | 6.956016934990709 | Score | -26.2534 |
|---|---|---|---|
| Inter norm | -0.800955 | Intra norm | 0.0914047 |
| Top1000 | no | Excluded | no |
| Contacts | 19 | H-bonds | 3 |
| Artifact reason | geometry warning; 16 clashes; 11 protein contact clashes; high strain Δ 30.1 | ||
| Residues | A:ALA10;A:ARG29;A:ASN65;A:GLU31;A:ILE61;A:ILE8;A:LEU23;A:LEU28;A:LEU68;A:NAP201;A:PHE32;A:PHE35;A:PRO27;A:PRO62;A:THR137;A:TRP25;A:TYR122;A:VAL116;A:VAL9 | ||
Protein summary
200 residues
| Protein target | T02 | Atoms | 3128 |
|---|---|---|---|
| Residues | 200 | Chains | 2 |
| Residue summary | LYS:374; LEU:361; GLU:240; VAL:224; ARG:192; PHE:180; ILE:171; PRO:168; ASN:140; SER:132; TYR:126; GLN:119; ASP:108; MET:102; THR:98; GLY:91 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5SD8 | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 5 |
| IFP residues | A:ALA10; A:ASN65; A:ASP22; A:GLN36; A:GLU31; A:GLY117; A:GLY21; A:ILE61; A:ILE8; A:LEU23; A:LEU68; A:NAP201; A:PHE32; A:PHE35; A:PRO62; A:SER60; A:THR137; A:THR57; A:TYR122; A:VAL116; A:VAL9 | ||
| Current overlap | 15 | Native recall | 0.71 |
| Jaccard | 0.60 | RMSD | - |
| H-bond strict | 1 | Strict recall | 0.20 |
| H-bond same residue+role | 2 | Role recall | 0.40 |
| H-bond same residue | 2 | Residue recall | 0.40 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 158 | 5.587416605055933 | -0.517844 | -19.598 | 4 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 121 | 5.667270276886944 | -0.7865 | -24.1006 | 2 | 19 | 16 | 0.76 | 0.20 | - | no | Open |
| 131 | 6.307012846604738 | -0.901314 | -31.5976 | 5 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 142 | 6.382994348494224 | -0.773478 | -25.8026 | 2 | 14 | 0 | 0.00 | 0.00 | - | no | Open |
| 134 | 6.846316942572459 | -0.748384 | -26.9946 | 1 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 122 | 6.956016934990709 | -0.800955 | -26.2534 | 3 | 19 | 15 | 0.71 | 0.40 | - | no | Current |
| 58 | 7.119271038412155 | -0.551209 | -15.8152 | 4 | 11 | 0 | 0.00 | 0.00 | - | no | Open |
| 59 | 7.257122895383278 | -0.648063 | -22.1081 | 6 | 13 | 0 | 0.00 | 0.00 | - | no | Open |
| 132 | 9.96352026228432 | -0.636513 | -17.0854 | 6 | 14 | 0 | 0.00 | 0.00 | - | no | Open |
| 156 | 5.937669063319742 | -0.565382 | -19.6431 | 3 | 16 | 0 | 0.00 | 0.00 | - | yes | Open |
| 130 | 7.131209958769979 | -0.541226 | -21.0962 | 6 | 15 | 0 | 0.00 | 0.00 | - | yes | Open |
| 123 | 7.7483350158359094 | -0.744352 | -27.9909 | 1 | 17 | 14 | 0.67 | 0.00 | - | yes | Open |
| 157 | 8.6076988519877 | -0.503016 | -18.1486 | 6 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 159 | 8.96580769477534 | -0.595766 | -21.543 | 5 | 10 | 0 | 0.00 | 0.00 | - | yes | Open |
| 133 | 9.24243102146462 | -0.893866 | -31.8275 | 3 | 17 | 0 | 0.00 | 0.00 | - | yes | Open |
| 60 | 9.406537947436496 | -0.602267 | -22.4837 | 4 | 15 | 0 | 0.00 | 0.00 | - | yes | Open |
| 143 | 9.643728377937702 | -0.780698 | -28.2201 | 0 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 124 | 9.840405290366467 | -0.710257 | -23.9882 | 2 | 21 | 16 | 0.76 | 0.40 | - | yes | Open |
| 145 | 10.059577142446992 | -0.961909 | -34.6797 | 6 | 19 | 0 | 0.00 | 0.00 | - | yes | Open |
| 132 | 10.151255150664152 | -0.938147 | -31.4622 | 5 | 17 | 0 | 0.00 | 0.00 | - | yes | Open |
| 61 | 11.120367863215355 | -0.674628 | -22.067 | 4 | 15 | 0 | 0.00 | 0.00 | - | yes | Open |
| 133 | 11.687455401746584 | -0.666768 | -25.3827 | 4 | 16 | 0 | 0.00 | 0.00 | - | yes | Open |
| 144 | 12.892570660312137 | -0.805227 | -26.3325 | 1 | 17 | 0 | 0.00 | 0.00 | - | yes | Open |
| 131 | 13.159373650829405 | -0.576407 | -16.4531 | 5 | 15 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-26.253kcal/mol
Ligand efficiency (LE)
-0.7096kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-7.264
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
37HA
Physicochemical properties
Molecular weight
552.4Da
Lipinski: ≤ 500 Da
LogP (cLogP)
5.58
Lipinski: ≤ 5
Rotatable bonds
6
Conformational strain (MMFF94s)
Strain energy (ΔE)
21.75kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
56.80kcal/mol
Minimised FF energy
35.05kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.