T. brucei TR · T17
T. brucei
PDB 5S9T
Protein: Trypanothione reductase
Binding site: Doorstop site
Receptor context: 2 cofactors / ions kept for scoring, 58 ligand-like HETATM excluded.
Kept context: A:FAD501, B:FAD501
Targets
1
each capped at 50 ligands
Best-pose candidates
596
one best pose per ligand per target
Synth metric
SA score
direct SA metric
Absolute burial proxy
n_exposed
absolute exposed hydrophobic atoms, not fraction
Pareto front 1
5
non-dominated ligands across all selected targets
Burial source
FreeSASA 200
Proxy 0 · Missing 0
Metrics coverage
Done 200
Pending 0 · Failed 0 · Missing 0
Diversity shortlist
Novelty 0.45
High novelty 200 · Close analogs 0
New vs legacy top 50
Added 6 · Dropped 6
Stayed 194 of 200 legacy picks
T17
Native
Front 1: 5
200 / 596 shortlisted
Best: ulfkktlib_1191 · score 64.4
Pareto layers observed: 13
Metrics: done 200 · pending 0 · failed 0 · missing 0
Diversity: novelty 0.45 · close analogs 0
New vs legacy: added 6 · dropped 6 · stayed 194/200
Added: Z49547615, OHD_TbNat_74, Z17189141
·
Dropped: OSA_Lib_232, Z31413736, OSA_Lib_244
| Target | 2D | Rank | Pareto | Assessment | Ligand | Compromise | Docking | Final rank | Inter norm | n_exposed | Strain dE | MW | cLogP | TPSA | SA score | Safety | Native sim | PAINS | Reactive | QED | SASA | Flags | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T17 T17 |
|
1 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1191
strong docking, well-buried hydrophobics, clean safety profile
DetailsWhy selected: Strong docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 6 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 109.1 · logP 0.37 · TPSA 51.8
|
64.4 | 0.92 | -1.2723 | -2.8081 | 1 | 1.02 | 109.1 | 0.37 | 51.8 | 2.878 | 0.76 | 0.47 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 3 clashes; 6 protein contact clashes
|
|
| T17 T17 |
|
2 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_2895
strong docking, well-buried hydrophobics, clean safety profile
DetailsWhy selected: Strong docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 128.2 · logP 0.43 · TPSA 48.6
|
63.5 | 0.88 | -0.5951 | -2.8480 | 0 | 1.59 | 128.2 | 0.43 | 48.6 | 3.060 | 0.76 | 0.47 | 0 | 0 | 0.50 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 3 clashes; 1 protein clash
|
|
| T17 T17 |
|
3 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z281786934
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 256.3 · logP 0.89 · TPSA 81.6
|
58.8 | 0.41 | 2.7138 | -1.2949 | 0 | 9.38 | 256.3 | 0.89 | 81.6 | 2.287 | 0.70 | 0.58 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 4 clashes; 3 protein clashes
|
|
| T17 T17 |
|
4 | 1 Front 1 (non-dominated) |
Binding
Weak
Geometry
Suspicious
Data
Complete
Action
Inspect
|
5S9T
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: native-like contact pattern and well-buried hydrophobics.
Main concern: Native reference ligand.
Action: Inspect the pose manually, especially around clashes, hydrogen bonds, and pocket fit.
MW 239.2 · logP 0.03 · TPSA 80.0
|
53.5 | 0.00 | - | - | 2 | - | 239.2 | 0.03 | 80.0 | 2.992 | 0.73 | 1.00 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Native reference ligand
|
|
| T17 T17 |
|
5 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z2737721067
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 282.3 · logP 3.59 · TPSA 78.4
|
47.1 | 0.51 | 1.8618 | -1.1188 | 4 | 14.34 | 282.3 | 3.59 | 78.4 | 2.360 | 0.70 | 0.18 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash
|
|
| T17 T17 |
|
6 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0116
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 2 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 169.2 · logP -0.67 · TPSA 87.3
|
51.3 | 0.51 | 2.4195 | -2.0176 | 0 | 7.01 | 169.2 | -0.67 | 87.3 | 3.716 | 0.73 | 0.47 | 0 | 0 | 0.36 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 2 clashes; 3 protein clashes
|
|
| T17 T17 |
|
7 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_953
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 313.4 · logP 4.90 · TPSA 49.6
|
49.0 | 0.51 | 0.8166 | -0.9777 | 4 | 9.70 | 313.4 | 4.90 | 49.6 | 2.323 | 0.62 | 0.58 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 3 protein contact clashes
|
|
| T17 T17 |
|
8 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49615771
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.2, geometry warning, and strain ΔE = 24.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 256.3 · logP 2.44 · TPSA 85.4
|
50.3 | 0.44 | 2.7041 | -1.1747 | 1 | 24.24 | 256.3 | 2.44 | 85.4 | 2.378 | 0.73 | 0.48 | 0 | 0 | 0.45 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.2
|
|
| T17 T17 |
|
9 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_Leishmania_402
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 25.0 and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 468.7 · logP 6.09 · TPSA 66.8
|
44.3 | 0.32 | 3.5124 | -0.7550 | 6 | 24.96 | 468.7 | 6.09 | 66.8 | 5.417 | 0.40 | 0.73 | 0 | 0 | 0.49 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 25.0
|
|
| T17 T17 |
|
10 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1165
well-buried hydrophobics, clean safety profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 218.3 · logP 0.54 · TPSA 65.7
|
44.1 | 0.44 | 2.9342 | -1.4646 | 3 | 15.51 | 218.3 | 0.54 | 65.7 | 3.570 | 0.76 | 0.12 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
|
|
| T17 T17 |
|
11 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56853835
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 6 protein contact clashes; high strain Δ 31.2, geometry warning, and strain ΔE = 31.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 337.9 · logP 4.99 · TPSA 42.8
|
43.8 | 0.51 | 0.6879 | -1.0223 | 2 | 31.24 | 337.9 | 4.99 | 42.8 | 2.359 | 0.65 | 0.22 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 6 protein contact clashes; high strain Δ 31.2
|
|
| T17 T17 |
|
12 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_215
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 4 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 314.5 · logP 2.41 · TPSA 72.5
|
43.4 | 0.51 | 0.6819 | -0.9937 | 6 | 15.79 | 314.5 | 2.41 | 72.5 | 3.093 | 0.62 | 0.38 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 4 protein contact clashes
|
|
| T17 T17 |
|
13 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_276
well-buried hydrophobics, clean safety profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.5 · logP 1.47 · TPSA 33.2
|
39.0 | 0.25 | 3.8605 | -0.9668 | 0 | 14.89 | 308.5 | 1.47 | 33.2 | 5.143 | 0.76 | 0.25 | 0 | 0 | 0.86 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 3 protein clashes
|
|
| T17 T17 |
|
14 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TbNat_63
41% of hydrophobic surface appears solvent-exposed (11/27 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 396.6 · logP 6.26 · TPSA 37.3
|
39.4 | 0.39 | 2.2283 | -0.7845 | 11 | 16.76 | 396.6 | 6.26 | 37.3 | 4.624 | 0.43 | 0.30 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 10 clashes; 1 protein clash
|
|
| T17 T17 |
|
15 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z21488718
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 294.3 · logP 3.30 · TPSA 75.6
|
50.8 | 0.45 | 1.4860 | -1.0588 | 2 | 9.32 | 294.3 | 3.30 | 75.6 | 2.188 | 0.70 | 0.67 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T17 T17 |
|
16 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z25107081
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 292.3 · logP 2.64 · TPSA 76.2
|
49.3 | 0.47 | 1.6426 | -1.2095 | 1 | 15.24 | 292.3 | 2.64 | 76.2 | 2.548 | 0.70 | 0.52 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T17 T17 |
|
17 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TbNat_133
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 6 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.3 · logP 2.08 · TPSA 106.2
|
48.4 | 0.48 | 1.0358 | -0.9424 | 2 | 15.96 | 344.3 | 2.08 | 106.2 | 4.172 | 0.73 | 0.57 | 0 | 0 | 0.82 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 6 protein contact clashes
|
|
| T17 T17 |
|
18 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0566
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.3 · logP 0.02 · TPSA 150.0
|
48.2 | 0.45 | 1.8110 | -1.1778 | 0 | 18.74 | 280.3 | 0.02 | 150.0 | 2.318 | 0.53 | 0.79 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T17 T17 |
|
19 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49712358
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 277.3 · logP 3.78 · TPSA 57.5
|
48.3 | 0.45 | 2.0936 | -1.0698 | 1 | 19.20 | 277.3 | 3.78 | 57.5 | 2.113 | 0.73 | 0.31 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash
|
|
| T17 T17 |
|
20 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z28138665
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 7 protein contact clashes; moderate strain Δ 26.3, geometry warning, and strain ΔE = 26.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 295.3 · logP 1.92 · TPSA 81.9
|
48.2 | 0.48 | 1.1366 | -1.0280 | 0 | 26.29 | 295.3 | 1.92 | 81.9 | 1.846 | 0.70 | 0.37 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 7 protein contact clashes; moderate strain Δ 26.3
|
|
| T17 T17 |
|
21 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30168606
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 304.3 · logP 3.80 · TPSA 51.2
|
48.1 | 0.48 | 1.2735 | -1.0094 | 1 | 8.52 | 304.3 | 3.80 | 51.2 | 1.621 | 0.62 | 0.35 | 0 | 0 | 0.78 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 5 protein contact clashes
|
|
| T17 T17 |
|
22 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z60744774
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 302.3 · logP 3.96 · TPSA 51.2
|
46.1 | 0.50 | 0.8959 | -1.0040 | 1 | 14.52 | 302.3 | 3.96 | 51.2 | 2.092 | 0.62 | 0.26 | 0 | 0 | 0.78 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 2 protein contact clashes
|
|
| T17 T17 |
|
23 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TC2_35
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein contact clashes; high strain Δ 30.7, geometry warning, and strain ΔE = 30.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 452.0 · logP -0.00 · TPSA 62.4
|
44.7 | 0.49 | 1.0018 | -0.7933 | 2 | 30.68 | 452.0 | -0.00 | 62.4 | 3.797 | 0.73 | 0.30 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein contact clashes; high strain Δ 30.7
|
|
| T17 T17 |
|
24 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z14345629
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 4 protein contact clashes; moderate strain Δ 24.6, geometry warning, and strain ΔE = 24.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 478.6 · logP 4.58 · TPSA 78.3
|
43.6 | 0.50 | 0.8883 | -0.7107 | 3 | 24.59 | 478.6 | 4.58 | 78.3 | 2.771 | 0.25 | 0.75 | 0 | 0 | 0.37 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 4 protein contact clashes; moderate strain Δ 24.6
|
|
| T17 T17 |
|
25 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC287
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 235.3 · logP -0.33 · TPSA 98.8
|
42.5 | 0.35 | 3.6078 | -1.3222 | 2 | 16.14 | 235.3 | -0.33 | 98.8 | 3.110 | 0.73 | 0.16 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
|
|
| T17 T17 |
|
26 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0781
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.3 · logP -0.53 · TPSA 116.2
|
41.7 | 0.35 | 3.2528 | -1.0907 | 0 | 15.40 | 310.3 | -0.53 | 116.2 | 2.366 | 0.67 | 0.21 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 10 clashes; 2 protein clashes
|
|
| T17 T17 |
|
27 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45614013
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 312.4 · logP 1.13 · TPSA 106.3
|
42.4 | 0.34 | 3.1689 | -1.1291 | 0 | 25.01 | 312.4 | 1.13 | 106.3 | 1.643 | 0.73 | 0.12 | 0 | 0 | 0.88 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 25.0
|
|
| T17 T17 |
|
28 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_97
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 4.11 · TPSA 93.3
|
40.3 | 0.37 | 2.3945 | -0.8326 | 0 | 13.84 | 410.5 | 4.11 | 93.3 | 2.418 | 0.36 | 0.37 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T17 T17 |
|
29 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1162
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.4 · logP 4.07 · TPSA 45.5
|
43.8 | 0.42 | 2.0407 | -0.9036 | 2 | 6.48 | 340.4 | 4.07 | 45.5 | 2.826 | 0.62 | 0.25 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 1 protein clash
|
|
| T17 T17 |
|
30 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1412
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 20.3, geometry warning, and strain ΔE = 20.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 253.5 · logP 1.37 · TPSA 81.1
|
38.6 | 0.40 | 3.2268 | -1.6165 | 0 | 20.29 | 253.5 | 1.37 | 81.1 | 3.441 | 0.55 | 0.17 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 20.3
|
|
| T17 T17 |
|
31 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_22
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 459.3 · logP 5.21 · TPSA 16.5
|
36.2 | 0.49 | 0.9354 | -0.7973 | 2 | 13.30 | 459.3 | 5.21 | 16.5 | 5.181 | 0.20 | 0.34 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein contact clashes
|
|
| T17 T17 |
|
32 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56877149
Hydrophobic burial looks adequate: 32% exposed (8/25 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 464.6 · logP 3.87 · TPSA 94.5
|
36.3 | 0.35 | 3.4129 | -0.7494 | 8 | 16.78 | 464.6 | 3.87 | 94.5 | 3.659 | 0.47 | 0.41 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
|
|
| T17 T17 |
|
33 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_Leishmania_404
57% of hydrophobic surface appears solvent-exposed (17/30 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 26.8 and strain ΔE = 26.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 466.7 · logP 6.30 · TPSA 63.6
|
31.0 | 0.27 | 4.0586 | -0.7779 | 17 | 26.84 | 466.7 | 6.30 | 63.6 | 5.379 | 0.40 | 0.39 | 0 | 0 | 0.50 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 26.8
|
|
| T17 T17 |
|
34 | 3 Front 3 |
Binding
Weak
Geometry
Bad
Data
Complete
Action
Reject
|
OHD_Leishmania_403
90% of hydrophobic surface is solvent-exposed (27/30 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 23.8 and strain ΔE = 23.8 kcal/mol.
Action: Reject this pose unless there is a compelling external reason to rescue the chemotype.
MW 468.7 · logP 6.09 · TPSA 66.8
|
21.0 | 0.20 | 4.1301 | -0.6612 | 27 | 23.76 | 468.7 | 6.09 | 66.8 | 5.436 | 0.40 | 0.28 | 0 | 0 | 0.49 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 23.8
|
|
| T17 T17 |
|
35 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z18586609
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 404.5 · logP 4.67 · TPSA 75.3
|
48.0 | 0.45 | 1.1577 | -0.8065 | 2 | 11.47 | 404.5 | 4.67 | 75.3 | 2.095 | 0.48 | 0.75 | 0 | 0 | 0.27 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 5 protein contact clashes
|
|
| T17 T17 |
|
36 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_ACDS_25
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.2 · logP 5.05 · TPSA 57.6
|
46.9 | 0.43 | 2.0659 | -1.0494 | 2 | 10.13 | 344.2 | 5.05 | 57.6 | 2.481 | 0.50 | 0.68 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T17 T17 |
|
37 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC271
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 297.3 · logP 2.30 · TPSA 91.4
|
48.4 | 0.44 | 1.5182 | -1.0890 | 3 | 12.43 | 297.3 | 2.30 | 91.4 | 2.229 | 0.70 | 0.64 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T17 T17 |
|
38 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0541
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 7 protein contact clashes; high strain Δ 37.7, geometry warning, and strain ΔE = 37.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 338.3 · logP -0.31 · TPSA 173.1
|
47.4 | 0.48 | 1.1131 | -0.9954 | 1 | 37.74 | 338.3 | -0.31 | 173.1 | 2.400 | 0.60 | 0.66 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 7 protein contact clashes; high strain Δ 37.7
|
|
| T17 T17 |
|
39 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
CKP-35
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 241.3 · logP 1.91 · TPSA 59.5
|
46.2 | 0.44 | 2.1514 | -1.2928 | 1 | 9.07 | 241.3 | 1.91 | 59.5 | 3.216 | 0.73 | 0.27 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T17 T17 |
|
40 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56896726
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 5 protein contact clashes; moderate strain Δ 22.6, geometry warning, and strain ΔE = 22.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 443.6 · logP 2.99 · TPSA 88.6
|
45.1 | 0.46 | 1.3858 | -0.7641 | 2 | 22.63 | 443.6 | 2.99 | 88.6 | 2.176 | 0.55 | 0.41 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 5 protein contact clashes; moderate strain Δ 22.6
|
|
| T17 T17 |
|
41 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_445
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 4 protein contact clashes; high strain Δ 38.2, geometry warning, and strain ΔE = 38.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.3 · logP 3.20 · TPSA 69.7
|
44.7 | 0.46 | 1.1930 | -0.8097 | 4 | 38.17 | 428.3 | 3.20 | 69.7 | 3.282 | 0.62 | 0.70 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 4 protein contact clashes; high strain Δ 38.2
|
|
| T17 T17 |
|
42 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_285
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein contact clashes; moderate strain Δ 25.2, geometry warning, and strain ΔE = 25.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.6 · logP 3.31 · TPSA 19.7
|
44.9 | 0.46 | 1.1117 | -0.7193 | 3 | 25.24 | 418.6 | 3.31 | 19.7 | 5.487 | 0.62 | 0.72 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein contact clashes; moderate strain Δ 25.2
|
|
| T17 T17 |
|
43 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0875
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 20.9, geometry warning, and strain ΔE = 20.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 366.4 · logP 3.10 · TPSA 89.3
|
44.4 | 0.31 | 3.5900 | -0.8765 | 2 | 20.92 | 366.4 | 3.10 | 89.3 | 1.898 | 0.58 | 0.59 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 20.9
|
|
| T17 T17 |
|
44 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0576
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; high strain Δ 32.8, geometry warning, and strain ΔE = 32.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 1.24 · TPSA 144.0
|
45.2 | 0.47 | 1.5324 | -0.9654 | 1 | 32.76 | 355.4 | 1.24 | 144.0 | 2.575 | 0.50 | 0.70 | 0 | 0 | 0.35 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 6 clashes; 1 protein clash; high strain Δ 32.8
|
|
| T17 T17 |
|
45 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1637
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 22 clashes; 3 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.5 · logP 3.14 · TPSA 75.6
|
42.2 | 0.37 | 2.2043 | -0.7018 | 8 | 13.30 | 428.5 | 3.14 | 75.6 | 2.828 | 0.55 | 0.70 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 22 clashes; 3 protein contact clashes
|
|
| T17 T17 |
|
46 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z44848695
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 6 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 437.5 · logP 4.18 · TPSA 102.2
|
42.2 | 0.42 | 1.6376 | -0.7190 | 4 | 10.34 | 437.5 | 4.18 | 102.2 | 2.378 | 0.36 | 0.62 | 0 | 0 | 0.32 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 6 protein contact clashes
|
|
| T17 T17 |
|
47 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56793767
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 19 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.4 · logP 4.55 · TPSA 66.9
|
41.0 | 0.26 | 4.1417 | -0.8685 | 0 | 18.65 | 378.4 | 4.55 | 66.9 | 2.846 | 0.43 | 0.64 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 19 clashes; 2 protein clashes
|
|
| T17 T17 |
|
48 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_64
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.5 · logP 3.13 · TPSA 77.3
|
42.2 | 0.36 | 2.6128 | -0.8183 | 6 | 11.15 | 418.5 | 3.13 | 77.3 | 2.114 | 0.55 | 0.56 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T17 T17 |
|
49 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1521553711
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 306.8 · logP 1.71 · TPSA 77.3
|
39.9 | 0.33 | 3.2127 | -1.1889 | 0 | 19.35 | 306.8 | 1.71 | 77.3 | 3.937 | 0.70 | 0.21 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
|
|
| T17 T17 |
|
50 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC458
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 25.1 and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 453.6 · logP 4.18 · TPSA 80.4
|
39.3 | 0.20 | 4.7040 | -0.7913 | 5 | 25.10 | 453.6 | 4.18 | 80.4 | 5.318 | 0.51 | 0.43 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 25.1
|
|
| T17 T17 |
|
51 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z92021212
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 3 protein contact clashes, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 474.6 · logP 4.89 · TPSA 98.8
|
38.9 | 0.47 | 1.3092 | -0.7490 | 8 | 18.24 | 474.6 | 4.89 | 98.8 | 2.520 | 0.25 | 0.68 | 0 | 0 | 0.29 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 3 protein contact clashes
|
|
| T17 T17 |
|
52 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0626
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.5 · logP 1.63 · TPSA 144.0
|
43.2 | 0.48 | 1.2853 | -0.9579 | 3 | 25.62 | 369.5 | 1.63 | 144.0 | 3.134 | 0.50 | 0.62 | 0 | 0 | 0.34 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 25.6
|
|
| T17 T17 |
|
53 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z44305068
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.8 · logP 3.74 · TPSA 102.4
|
37.8 | 0.29 | 3.8312 | -0.9148 | 6 | 14.03 | 400.8 | 3.74 | 102.4 | 2.336 | 0.58 | 0.34 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
|
|
| T17 T17 |
|
54 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_253
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein contact clashes; moderate strain Δ 20.8, geometry warning, and strain ΔE = 20.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 473.7 · logP 2.94 · TPSA 14.2
|
39.3 | 0.45 | 0.9278 | -0.6512 | 6 | 20.84 | 473.7 | 2.94 | 14.2 | 4.896 | 0.58 | 0.42 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein contact clashes; moderate strain Δ 20.8
|
|
| T17 T17 |
|
55 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z123660746
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes; high strain Δ 32.1, geometry warning, and strain ΔE = 32.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 360.4 · logP 1.69 · TPSA 95.7
|
40.0 | 0.22 | 4.0822 | -0.9196 | 0 | 32.10 | 360.4 | 1.69 | 95.7 | 1.798 | 0.73 | 0.29 | 0 | 0 | 0.87 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein clashes; high strain Δ 32.1
|
|
| T17 T17 |
|
56 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z108847942
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.5 · logP 2.80 · TPSA 90.3
|
39.0 | 0.39 | 2.7361 | -0.9286 | 7 | 16.04 | 389.5 | 2.80 | 90.3 | 2.100 | 0.62 | 0.18 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
|
|
| T17 T17 |
|
57 | 4 Front 4 |
Binding
Weak
Geometry
Bad
Data
Complete
Action
Reject
|
Z57676781
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; 3 cofactor-context clashes and geometry warning.
Action: Reject this pose unless there is a compelling external reason to rescue the chemotype.
MW 379.3 · logP 4.77 · TPSA 56.2
|
35.6 | 0.20 | 4.5140 | -0.9601 | 0 | 7.69 | 379.3 | 4.77 | 56.2 | 2.850 | 0.43 | 0.32 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; 3 cofactor-context clashes
|
|
| T17 T17 |
|
58 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_ACDS_26
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 433.1 · logP 5.26 · TPSA 57.6
|
41.3 | 0.35 | 2.8964 | -1.0033 | 2 | 10.23 | 433.1 | 5.26 | 57.6 | 2.594 | 0.32 | 0.68 | 0 | 0 | 0.41 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
|
|
| T17 T17 |
|
59 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z16547003
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 4 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 450.6 · logP 6.28 · TPSA 71.5
|
38.6 | 0.46 | 1.6444 | -0.7816 | 6 | 16.94 | 450.6 | 6.28 | 71.5 | 2.321 | 0.11 | 0.73 | 0 | 0 | 0.24 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 4 protein contact clashes
|
|
| T17 T17 |
|
60 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0527
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes, geometry warning, and tox alerts x2.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 276.3 · logP 2.33 · TPSA 110.9
|
36.2 | 0.38 | 2.7248 | -1.2313 | 0 | 16.54 | 276.3 | 2.33 | 110.9 | 2.222 | 0.39 | 0.37 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x2, Geometry warning, geometry warning; 7 clashes; 2 protein clashes
|
|
| T17 T17 |
|
61 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0368
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 4 protein clashes; moderate strain Δ 24.1, geometry warning, and strain ΔE = 24.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 282.3 · logP -0.14 · TPSA 138.2
|
37.5 | 0.29 | 4.2834 | -1.2485 | 0 | 24.14 | 282.3 | -0.14 | 138.2 | 2.663 | 0.60 | 0.22 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 6 clashes; 4 protein clashes; moderate strain Δ 24.1
|
|
| T17 T17 |
|
62 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z594284196
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 2 clashes; 2 protein clashes; moderate strain Δ 22.4 and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 244.2 · logP -3.01 · TPSA 143.7
|
47.7 | 0.40 | 2.4231 | -1.3377 | 2 | 22.36 | 244.2 | -3.01 | 143.7 | 3.869 | 0.60 | 0.30 | 0 | 0 | 0.44 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 2 clashes; 2 protein clashes; moderate strain Δ 22.4
|
|
| T17 T17 |
|
63 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57783660
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 2 protein contact clashes; high strain Δ 31.0, geometry warning, and strain ΔE = 31.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 447.5 · logP 1.09 · TPSA 112.2
|
47.8 | 0.44 | 1.4231 | -0.7043 | 1 | 31.02 | 447.5 | 1.09 | 112.2 | 2.942 | 0.66 | 0.61 | 0 | 0 | 0.41 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 2 protein contact clashes; high strain Δ 31.0
|
|
| T17 T17 |
|
64 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57281539
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 300.7 · logP 4.12 · TPSA 69.1
|
48.4 | 0.40 | 2.2720 | -1.0782 | 1 | 11.42 | 300.7 | 4.12 | 69.1 | 2.330 | 0.62 | 0.64 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
|
|
| T17 T17 |
|
65 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57009636
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 315.3 · logP 1.60 · TPSA 88.0
|
46.2 | 0.40 | 1.9065 | -0.9905 | 3 | 10.90 | 315.3 | 1.60 | 88.0 | 2.587 | 0.73 | 0.51 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash
|
|
| T17 T17 |
|
66 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56763036
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.4 · logP 3.29 · TPSA 87.0
|
45.4 | 0.37 | 2.7169 | -1.0315 | 1 | 18.67 | 322.4 | 3.29 | 87.0 | 3.616 | 0.73 | 0.48 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 2 protein clashes
|
|
| T17 T17 |
|
67 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1269163651
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 2 clashes; 3 protein clashes; high strain Δ 40.0 and strain ΔE = 40.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 208.2 · logP -4.68 · TPSA 105.6
|
43.6 | 0.44 | 2.9633 | -1.6394 | 6 | 40.04 | 208.2 | -4.68 | 105.6 | 5.778 | 0.70 | 0.17 | 0 | 0 | 0.28 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 2 clashes; 3 protein clashes; high strain Δ 40.0
|
|
| T17 T17 |
|
68 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z2940609369
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 271.3 · logP 2.23 · TPSA 72.7
|
45.4 | 0.40 | 2.3795 | -1.2099 | 4 | 10.03 | 271.3 | 2.23 | 72.7 | 2.818 | 0.73 | 0.51 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash
|
|
| T17 T17 |
|
69 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z31233831
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 362.5 · logP 2.61 · TPSA 98.0
|
44.0 | 0.25 | 3.9906 | -0.9273 | 2 | 16.22 | 362.5 | 2.61 | 98.0 | 2.249 | 0.58 | 0.71 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
|
|
| T17 T17 |
|
70 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK188
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 459.5 · logP 4.65 · TPSA 64.8
|
44.0 | 0.41 | 1.9880 | -0.7691 | 2 | 17.00 | 459.5 | 4.65 | 64.8 | 2.820 | 0.36 | 0.73 | 0 | 0 | 0.40 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash
|
|
| T17 T17 |
|
71 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56896655
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 20.4, geometry warning, and strain ΔE = 20.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.0 · logP 5.94 · TPSA 72.5
|
43.3 | 0.42 | 1.9526 | -0.7665 | 2 | 20.36 | 432.0 | 5.94 | 72.5 | 2.353 | 0.28 | 0.76 | 0 | 0 | 0.34 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 20.4
|
|
| T17 T17 |
|
72 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_26
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 3 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 474.5 · logP 2.21 · TPSA 52.0
|
43.8 | 0.42 | 1.3300 | -0.6952 | 1 | 17.55 | 474.5 | 2.21 | 52.0 | 5.794 | 0.62 | 0.59 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 3 protein contact clashes
|
|
| T17 T17 |
|
73 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56919893
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes, geometry warning, and strain ΔE = 19.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.5 · logP 0.38 · TPSA 106.5
|
42.0 | 0.34 | 3.4586 | -1.0308 | 4 | 19.28 | 369.5 | 0.38 | 106.5 | 2.672 | 0.70 | 0.36 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 3 protein clashes
|
|
| T17 T17 |
|
74 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TC1_150
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 23.8, geometry warning, and strain ΔE = 23.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.8 · logP 1.67 · TPSA 100.6
|
43.9 | 0.42 | 2.1934 | -0.8675 | 5 | 23.83 | 375.8 | 1.67 | 100.6 | 3.534 | 0.70 | 0.43 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 23.8
|
|
| T17 T17 |
|
75 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57233591
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 318.3 · logP 3.56 · TPSA 66.8
|
42.1 | 0.42 | 2.0032 | -1.0027 | 6 | 9.45 | 318.3 | 3.56 | 66.8 | 2.297 | 0.73 | 0.17 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash
|
|
| T17 T17 |
|
76 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_38
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.5 · logP 3.02 · TPSA 77.6
|
43.3 | 0.42 | 1.8153 | -0.7945 | 1 | 15.64 | 412.5 | 3.02 | 77.6 | 3.038 | 0.58 | 0.32 | 0 | 0 | 0.60 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 5 protein contact clashes
|
|
| T17 T17 |
|
77 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_302
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 4 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.6 · logP 3.81 · TPSA 32.7
|
45.6 | 0.43 | 1.5685 | -0.7842 | 2 | 17.45 | 398.6 | 3.81 | 32.7 | 4.942 | 0.62 | 0.70 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 4 protein contact clashes
|
|
| T17 T17 |
|
78 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56775819
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 28.9, geometry warning, and strain ΔE = 28.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 364.4 · logP 1.67 · TPSA 140.7
|
42.2 | 0.29 | 3.4815 | -0.9251 | 0 | 28.88 | 364.4 | 1.67 | 140.7 | 2.474 | 0.60 | 0.52 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 28.9
|
|
| T17 T17 |
|
79 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45537946
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 31.1, geometry warning, and strain ΔE = 31.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 0.95 · TPSA 106.3
|
43.7 | 0.42 | 2.5391 | -1.1217 | 1 | 31.13 | 344.4 | 0.95 | 106.3 | 1.784 | 0.73 | 0.12 | 0 | 0 | 0.84 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 31.1
|
|
| T17 T17 |
|
80 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_192
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein contact clash; high strain Δ 47.0, geometry warning, and strain ΔE = 47.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 466.6 · logP 2.20 · TPSA 96.1
|
41.3 | 0.45 | 0.8707 | -0.6899 | 3 | 47.01 | 466.6 | 2.20 | 96.1 | 4.184 | 0.55 | 0.64 | 0 | 0 | 0.47 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein contact clash; high strain Δ 47.0
|
|
| T17 T17 |
|
81 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1508915075
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 211.2 · logP 0.44 · TPSA 103.8
|
41.6 | 0.39 | 3.1812 | -1.4899 | 2 | 17.43 | 211.2 | 0.44 | 103.8 | 2.749 | 0.70 | 0.13 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 3 protein clashes
|
|
| T17 T17 |
|
82 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z27077125
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 3 protein contact clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.5 · logP 3.83 · TPSA 75.7
|
41.1 | 0.44 | 1.1540 | -0.7866 | 3 | 25.67 | 416.5 | 3.83 | 75.7 | 2.771 | 0.58 | 0.30 | 0 | 0 | 0.78 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 3 protein contact clashes; moderate strain Δ 25.7
|
|
| T17 T17 |
|
83 | 5 Front 5 |
Binding
Weak
Geometry
Bad
Data
Complete
Action
Reject
|
OHD_TbNat_18
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes and geometry warning.
Action: Reject this pose unless there is a compelling external reason to rescue the chemotype.
MW 270.2 · logP 2.58 · TPSA 90.9
|
38.5 | 0.25 | 4.1093 | -1.1335 | 3 | 9.30 | 270.2 | 2.58 | 90.9 | 2.297 | 0.70 | 0.17 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
|
|
| T17 T17 |
|
84 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_43
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 2 protein contact clashes; moderate strain Δ 23.8, geometry warning, and strain ΔE = 23.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 489.7 · logP 3.15 · TPSA 54.2
|
39.4 | 0.44 | 1.5658 | -0.7135 | 2 | 23.83 | 489.7 | 3.15 | 54.2 | 5.100 | 0.47 | 0.42 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 2 protein contact clashes; moderate strain Δ 23.8
|
|
| T17 T17 |
|
85 | 5 Front 5 |
Binding
Weak
Geometry
Bad
Data
Complete
Action
Reject
|
Z68196981
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 3 protein clashes; high strain Δ 33.8, geometry warning, and strain ΔE = 33.8 kcal/mol.
Action: Reject this pose unless there is a compelling external reason to rescue the chemotype.
MW 408.9 · logP 3.86 · TPSA 86.7
|
36.8 | 0.17 | 4.7557 | -0.8900 | 0 | 33.79 | 408.9 | 3.86 | 86.7 | 1.967 | 0.62 | 0.37 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; high strain Δ 33.8
|
|
| T17 T17 |
|
86 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_3002
38% of hydrophobic surface appears solvent-exposed (8/21 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 4 protein contact clashes, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 385.5 · logP 1.52 · TPSA 93.8
|
33.8 | 0.44 | 1.2100 | -0.7713 | 8 | 19.57 | 385.5 | 1.52 | 93.8 | 4.245 | 0.42 | 0.43 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 11 clashes; 4 protein contact clashes
|
|
| T17 T17 |
|
87 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56935963
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes; moderate strain Δ 29.4, geometry warning, and strain ΔE = 29.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 392.5 · logP 0.90 · TPSA 101.2
|
45.9 | 0.37 | 2.8402 | -0.8993 | 2 | 29.42 | 392.5 | 0.90 | 101.2 | 3.694 | 0.66 | 0.69 | 0 | 0 | 0.28 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 2 protein clashes; moderate strain Δ 29.4
|
|
| T17 T17 |
|
88 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z226217786
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.3, geometry warning, and strain ΔE = 20.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.4 · logP 0.43 · TPSA 101.5
|
46.2 | 0.34 | 2.8498 | -0.8219 | 2 | 20.33 | 380.4 | 0.43 | 101.5 | 3.146 | 0.70 | 0.67 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.3
|
|
| T17 T17 |
|
89 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_83
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 1 protein clash; high strain Δ 33.2, geometry warning, and strain ΔE = 33.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 325.4 · logP 0.72 · TPSA 103.1
|
45.2 | 0.42 | 1.3747 | -0.9367 | 2 | 33.22 | 325.4 | 0.72 | 103.1 | 3.918 | 0.66 | 0.73 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 1 protein clash; high strain Δ 33.2
|
|
| T17 T17 |
|
90 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56833776
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 346.4 · logP 4.59 · TPSA 72.2
|
44.9 | 0.39 | 1.9955 | -0.8838 | 1 | 18.95 | 346.4 | 4.59 | 72.2 | 2.032 | 0.62 | 0.42 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash
|
|
| T17 T17 |
|
91 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_Leish_182
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 381.4 · logP 3.68 · TPSA 94.5
|
44.4 | 0.34 | 2.6593 | -0.7770 | 2 | 15.19 | 381.4 | 3.68 | 94.5 | 2.488 | 0.58 | 0.59 | 0 | 0 | 0.70 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 1 protein clash
|
|
| T17 T17 |
|
92 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1546616194
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 2 protein clashes; high strain Δ 35.9, geometry warning, and strain ΔE = 35.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 287.2 · logP -0.05 · TPSA 136.4
|
40.9 | 0.41 | 2.6118 | -1.1881 | 3 | 35.94 | 287.2 | -0.05 | 136.4 | 3.382 | 0.70 | 0.23 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; high strain Δ 35.9
|
|
| T17 T17 |
|
93 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC249
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 29.4, geometry warning, and strain ΔE = 29.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 297.3 · logP 1.72 · TPSA 83.0
|
41.2 | 0.34 | 2.5617 | -1.0233 | 1 | 29.41 | 297.3 | 1.72 | 83.0 | 2.860 | 0.73 | 0.31 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 29.4
|
|
| T17 T17 |
|
94 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_182
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 39.0, geometry warning, and strain ΔE = 39.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.6 · logP 1.00 · TPSA 76.0
|
39.7 | 0.38 | 1.8858 | -0.7683 | 2 | 38.96 | 431.6 | 1.00 | 76.0 | 3.574 | 0.66 | 0.34 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 39.0
|
|
| T17 T17 |
|
95 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC230
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 42.3, geometry warning, and strain ΔE = 42.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 387.5 · logP -0.32 · TPSA 88.2
|
39.2 | 0.25 | 3.8693 | -0.8293 | 1 | 42.35 | 387.5 | -0.32 | 88.2 | 4.278 | 0.70 | 0.52 | 0 | 0 | 0.56 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 42.3
|
|
| T17 T17 |
|
96 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1043
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 24.7, geometry warning, and strain ΔE = 24.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 284.3 · logP 0.03 · TPSA 108.0
|
39.5 | 0.34 | 3.1042 | -1.1039 | 3 | 24.73 | 284.3 | 0.03 | 108.0 | 3.249 | 0.70 | 0.25 | 0 | 0 | 0.70 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 24.7
|
|
| T17 T17 |
|
97 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z44591568
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 37.8, geometry warning, and strain ΔE = 37.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.9 · logP 4.79 · TPSA 96.5
|
39.7 | 0.27 | 2.7015 | -0.7706 | 0 | 37.79 | 431.9 | 4.79 | 96.5 | 1.835 | 0.40 | 0.79 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 37.8
|
|
| T17 T17 |
|
98 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z26394837
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 368.4 · logP 2.08 · TPSA 94.3
|
40.5 | 0.34 | 2.9586 | -0.8829 | 3 | 19.51 | 368.4 | 2.08 | 94.3 | 2.736 | 0.62 | 0.30 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
|
|
| T17 T17 |
|
99 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_303
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 6 protein contact clashes, geometry warning, and strain ΔE = 18.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.6 · logP 3.81 · TPSA 32.7
|
45.9 | 0.42 | 1.6947 | -0.8060 | 2 | 18.43 | 398.6 | 3.81 | 32.7 | 4.932 | 0.62 | 0.75 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 6 protein contact clashes
|
|
| T17 T17 |
|
100 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1053
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 2 protein clashes; high strain Δ 33.0, geometry warning, and strain ΔE = 33.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 286.7 · logP -1.07 · TPSA 113.0
|
39.3 | 0.39 | 2.7229 | -1.1931 | 4 | 33.05 | 286.7 | -1.07 | 113.0 | 3.901 | 0.73 | 0.22 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; high strain Δ 33.0
|
|
| T17 T17 |
|
101 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_304
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.6 · logP 3.81 · TPSA 32.7
|
44.6 | 0.35 | 2.4813 | -0.7521 | 1 | 23.37 | 398.6 | 3.81 | 32.7 | 4.936 | 0.62 | 0.76 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 23.4
|
|
| T17 T17 |
|
102 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_17
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 22.4, geometry warning, and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.5 · logP 1.13 · TPSA 123.8
|
38.8 | 0.34 | 2.9294 | -0.8433 | 5 | 22.36 | 400.5 | 1.13 | 123.8 | 3.166 | 0.63 | 0.34 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 22.4
|
|
| T17 T17 |
|
103 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z31238000
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 22.0, geometry warning, and strain ΔE = 22.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 442.6 · logP 2.43 · TPSA 96.6
|
38.5 | 0.22 | 4.2373 | -0.7758 | 1 | 21.95 | 442.6 | 2.43 | 96.6 | 2.263 | 0.55 | 0.39 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 22.0
|
|
| T17 T17 |
|
104 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_86
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 420.5 · logP 3.12 · TPSA 126.1
|
37.2 | 0.36 | 2.4644 | -0.7938 | 7 | 15.42 | 420.5 | 3.12 | 126.1 | 3.140 | 0.52 | 0.39 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T17 T17 |
|
105 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_89
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 1 protein clash; high strain Δ 38.0, geometry warning, and strain ΔE = 38.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 462.7 · logP 0.57 · TPSA 41.2
|
37.6 | 0.37 | 2.7518 | -0.6975 | 13 | 38.01 | 462.7 | 0.57 | 41.2 | 5.719 | 0.70 | 0.79 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 1 protein clash; high strain Δ 38.0
|
|
| T17 T17 |
|
106 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0617
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash; high strain Δ 32.0, geometry warning, and strain ΔE = 32.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 383.5 · logP 1.87 · TPSA 144.0
|
42.4 | 0.43 | 1.7249 | -0.9016 | 3 | 31.98 | 383.5 | 1.87 | 144.0 | 2.633 | 0.50 | 0.70 | 0 | 0 | 0.32 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 7 clashes; 1 protein clash; high strain Δ 32.0
|
|
| T17 T17 |
|
107 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_197
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 25.3, geometry warning, and strain ΔE = 25.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 434.6 · logP 1.84 · TPSA 35.2
|
37.7 | 0.31 | 2.6810 | -0.6965 | 3 | 25.29 | 434.6 | 1.84 | 35.2 | 5.904 | 0.73 | 0.34 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 25.3
|
|
| T17 T17 |
|
108 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45901653
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 488.9 · logP 3.48 · TPSA 52.6
|
34.7 | 0.39 | 2.2511 | -0.8654 | 7 | 13.99 | 488.9 | 3.48 | 52.6 | 2.143 | 0.44 | 0.29 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 11 clashes; 1 protein clash
|
|
| T17 T17 |
|
109 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1639
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 4 protein contact clashes, geometry warning, and strain ΔE = 19.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 448.5 · logP 4.59 · TPSA 75.2
|
38.8 | 0.39 | 1.8087 | -0.6573 | 6 | 19.49 | 448.5 | 4.59 | 75.2 | 2.683 | 0.40 | 0.57 | 0 | 0 | 0.47 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 4 protein contact clashes
|
|
| T17 T17 |
|
110 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_277
43% of hydrophobic surface appears solvent-exposed (13/30 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 2 protein contact clashes; high strain Δ 32.4, geometry warning, and strain ΔE = 32.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 462.7 · logP 1.43 · TPSA 24.2
|
35.7 | 0.44 | 1.3403 | -0.6694 | 13 | 32.42 | 462.7 | 1.43 | 24.2 | 5.688 | 0.70 | 0.51 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 2 protein contact clashes; high strain Δ 32.4
|
|
| T17 T17 |
|
111 | 6 Front 6 |
Binding
Weak
Geometry
Bad
Data
Complete
Action
Reject
|
NMT-TY0819
reasonable synthesis profile
DetailsWhy selected: well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.1 kcal/mol.
Action: Reject this pose unless there is a compelling external reason to rescue the chemotype.
MW 352.4 · logP -0.16 · TPSA 119.3
|
36.4 | 0.22 | 4.4370 | -0.9482 | 7 | 18.07 | 352.4 | -0.16 | 119.3 | 2.218 | 0.73 | 0.25 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
|
|
| T17 T17 |
|
112 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z89541367
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 27.6, geometry warning, and strain ΔE = 27.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.4 · logP 3.22 · TPSA 74.8
|
48.7 | 0.36 | 2.4363 | -0.8494 | 1 | 27.60 | 361.4 | 3.22 | 74.8 | 2.697 | 0.62 | 0.94 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 27.6
|
|
| T17 T17 |
|
113 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1155
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 2 protein clashes; high strain Δ 30.9, geometry warning, and strain ΔE = 30.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 2.15 · TPSA 106.9
|
43.5 | 0.32 | 3.6245 | -0.8587 | 2 | 30.95 | 355.4 | 2.15 | 106.9 | 2.856 | 0.58 | 0.61 | 0 | 0 | 0.33 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 2 protein clashes; high strain Δ 30.9
|
|
| T17 T17 |
|
114 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2022_22
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.3, geometry warning, and strain ΔE = 24.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.5 · logP 1.60 · TPSA 126.5
|
43.2 | 0.34 | 2.6761 | -0.7819 | 3 | 24.28 | 418.5 | 1.60 | 126.5 | 3.557 | 0.63 | 0.69 | 0 | 0 | 0.41 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.3
|
|
| T17 T17 |
|
115 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2022_41
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 27.3, geometry warning, and strain ΔE = 27.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 326.4 · logP 1.84 · TPSA 109.6
|
43.5 | 0.23 | 4.1877 | -0.9274 | 3 | 27.33 | 326.4 | 1.84 | 109.6 | 2.866 | 0.70 | 0.79 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 27.3
|
|
| T17 T17 |
|
116 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49620451
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 360.4 · logP 3.51 · TPSA 102.5
|
45.0 | 0.28 | 3.8795 | -0.8357 | 2 | 27.05 | 360.4 | 3.51 | 102.5 | 2.496 | 0.58 | 0.79 | 0 | 0 | 0.28 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 27.0
|
|
| T17 T17 |
|
117 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_Babesia_56
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 24.5, geometry warning, and strain ΔE = 24.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 461.6 · logP 1.28 · TPSA 92.4
|
41.0 | 0.32 | 2.7455 | -0.6701 | 3 | 24.54 | 461.6 | 1.28 | 92.4 | 3.938 | 0.66 | 0.47 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 24.5
|
|
| T17 T17 |
|
118 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_128
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; 1 cofactor-context clash, geometry warning, and strain ΔE = 19.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 300.4 · logP 2.21 · TPSA 87.6
|
40.8 | 0.33 | 3.0290 | -1.0632 | 1 | 19.93 | 300.4 | 2.21 | 87.6 | 2.809 | 0.58 | 0.34 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; 1 cofactor-context clash
|
|
| T17 T17 |
|
119 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1157834224
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 22.6, geometry warning, and strain ΔE = 22.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 384.5 · logP 4.16 · TPSA 82.7
|
41.0 | 0.37 | 1.8863 | -0.8437 | 2 | 22.65 | 384.5 | 4.16 | 82.7 | 2.584 | 0.40 | 0.71 | 0 | 0 | 0.36 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 22.6
|
|
| T17 T17 |
|
120 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_Leish_55
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.8 · logP 3.44 · TPSA 56.9
|
39.0 | 0.23 | 4.0847 | -0.9745 | 2 | 14.67 | 340.8 | 3.44 | 56.9 | 3.344 | 0.62 | 0.46 | 0 | 0 | 0.77 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
|
|
| T17 T17 |
|
121 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_MAC_38
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 6 protein contact clashes; moderate strain Δ 29.9, geometry warning, and strain ΔE = 29.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.8 · logP 4.40 · TPSA 88.0
|
38.4 | 0.39 | 1.6054 | -0.8304 | 7 | 29.88 | 393.8 | 4.40 | 88.0 | 2.507 | 0.40 | 0.77 | 0 | 0 | 0.39 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 6 protein contact clashes; moderate strain Δ 29.9
|
|
| T17 T17 |
|
122 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_39
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 20.8, geometry warning, and strain ΔE = 20.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 3.04 · TPSA 46.1
|
37.5 | 0.21 | 4.8114 | -1.0190 | 1 | 20.83 | 332.4 | 3.04 | 46.1 | 3.155 | 0.62 | 0.33 | 0 | 0 | 0.77 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 20.8
|
|
| T17 T17 |
|
123 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1615
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 40.1, geometry warning, and strain ΔE = 40.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 438.5 · logP 3.14 · TPSA 81.4
|
39.9 | 0.36 | 2.3690 | -0.6854 | 7 | 40.09 | 438.5 | 3.14 | 81.4 | 3.497 | 0.58 | 0.70 | 0 | 0 | 0.50 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 40.1
|
|
| T17 T17 |
|
124 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TbNat_71
Hydrophobic burial looks adequate: 33% exposed (10/30 atoms). No penalty flagged.
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes; high strain Δ 37.4 and strain ΔE = 37.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 504.7 · logP 4.00 · TPSA 118.2
|
36.2 | 0.29 | 3.1616 | -0.6427 | 10 | 37.41 | 504.7 | 4.00 | 118.2 | 5.238 | 0.51 | 0.32 | 0 | 0 | 0.36 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 6 clashes; 2 protein clashes; high strain Δ 37.4
|
|
| T17 T17 |
|
125 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56920485
41% of hydrophobic surface appears solvent-exposed (7/17 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; high strain Δ 37.0, geometry warning, and strain ΔE = 37.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.4 · logP 1.17 · TPSA 92.0
|
38.8 | 0.33 | 3.1832 | -0.9647 | 7 | 36.97 | 348.4 | 1.17 | 92.0 | 3.762 | 0.70 | 0.56 | 0 | 0 | 0.50 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; high strain Δ 37.0
|
|
| T17 T17 |
|
126 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC392
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.5 · logP 4.30 · TPSA 108.8
|
36.0 | 0.34 | 2.6315 | -0.8373 | 4 | 17.86 | 428.5 | 4.30 | 108.8 | 3.823 | 0.48 | 0.37 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T17 T17 |
|
127 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56853873
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.5 · logP 2.68 · TPSA 80.2
|
37.0 | 0.34 | 2.6135 | -0.8089 | 7 | 19.38 | 416.5 | 2.68 | 80.2 | 2.238 | 0.55 | 0.31 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
|
|
| T17 T17 |
|
128 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30857952
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 27.6, geometry warning, and strain ΔE = 27.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.4 · logP 1.24 · TPSA 98.5
|
36.8 | 0.24 | 3.4320 | -0.9620 | 3 | 27.60 | 348.4 | 1.24 | 98.5 | 1.743 | 0.70 | 0.30 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 27.6
|
|
| T17 T17 |
|
129 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z199054106
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 6 protein contact clashes; high strain Δ 40.1, geometry warning, and strain ΔE = 40.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 392.5 · logP 6.58 · TPSA 57.4
|
36.4 | 0.39 | 1.5343 | -0.7766 | 4 | 40.11 | 392.5 | 6.58 | 57.4 | 2.359 | 0.28 | 0.64 | 0 | 0 | 0.36 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 6 protein contact clashes; high strain Δ 40.1
|
|
| T17 T17 |
|
130 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_35
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 4 protein clashes; moderate strain Δ 26.6, geometry warning, and strain ΔE = 26.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 301.2 · logP 0.51 · TPSA 136.4
|
38.5 | 0.26 | 3.9347 | -1.1809 | 2 | 26.62 | 301.2 | 0.51 | 136.4 | 3.504 | 0.66 | 0.47 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 4 protein clashes; moderate strain Δ 26.6
|
|
| T17 T17 |
|
131 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_170
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 383.4 · logP 4.21 · TPSA 67.0
|
34.0 | 0.21 | 4.2253 | -0.8306 | 2 | 14.29 | 383.4 | 4.21 | 67.0 | 3.106 | 0.43 | 0.34 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
|
|
| T17 T17 |
|
132 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z19222909
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 6 protein contact clashes, geometry warning, and strain ΔE = 19.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 450.6 · logP 6.36 · TPSA 71.5
|
36.8 | 0.37 | 2.1524 | -0.7425 | 4 | 19.22 | 450.6 | 6.36 | 71.5 | 2.777 | 0.11 | 0.79 | 0 | 0 | 0.24 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 6 protein contact clashes
|
|
| T17 T17 |
|
133 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC92
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.6 · logP 6.13 · TPSA 37.3
|
35.5 | 0.33 | 2.5556 | -0.7415 | 4 | 15.14 | 406.6 | 6.13 | 37.3 | 3.997 | 0.43 | 0.35 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T17 T17 |
|
134 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_137
43% of hydrophobic surface appears solvent-exposed (13/30 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 4 protein contact clashes; moderate strain Δ 30.0, geometry warning, and strain ΔE = 30.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 476.7 · logP 0.91 · TPSA 32.4
|
34.9 | 0.41 | 1.6684 | -0.6966 | 13 | 29.97 | 476.7 | 0.91 | 32.4 | 5.379 | 0.70 | 0.50 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 4 protein contact clashes; moderate strain Δ 30.0
|
|
| T17 T17 |
|
135 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_133
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 1 protein clash; high strain Δ 36.8, geometry warning, and strain ΔE = 36.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 447.7 · logP 1.80 · TPSA 38.0
|
36.2 | 0.33 | 2.8556 | -0.7108 | 13 | 36.78 | 447.7 | 1.80 | 38.0 | 5.848 | 0.73 | 0.80 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; high strain Δ 36.8
|
|
| T17 T17 |
|
136 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_219
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash; high strain Δ 33.1, geometry warning, and strain ΔE = 33.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 491.7 · logP 1.77 · TPSA 38.4
|
36.1 | 0.32 | 2.5583 | -0.6243 | 6 | 33.08 | 491.7 | 1.77 | 38.4 | 5.862 | 0.70 | 0.44 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash; high strain Δ 33.1
|
|
| T17 T17 |
|
137 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_301
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.6 · logP 3.99 · TPSA 45.9
|
36.2 | 0.37 | 2.6656 | -0.8609 | 9 | 18.56 | 412.6 | 3.99 | 45.9 | 4.900 | 0.55 | 0.71 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 14 clashes; 1 protein clash
|
|
| T17 T17 |
|
138 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_85
Hydrophobic burial looks adequate: 34% exposed (11/32 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; high strain Δ 33.8, geometry warning, and strain ΔE = 33.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 502.7 · logP 1.59 · TPSA 32.4
|
33.0 | 0.34 | 2.1713 | -0.6040 | 11 | 33.84 | 502.7 | 1.59 | 32.4 | 5.589 | 0.70 | 0.42 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash; high strain Δ 33.8
|
|
| T17 T17 |
|
139 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_21
38% of hydrophobic surface appears solvent-exposed (12/32 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 502.7 · logP 1.49 · TPSA 41.2
|
32.7 | 0.33 | 2.6138 | -0.7113 | 12 | 25.84 | 502.7 | 1.49 | 41.2 | 5.702 | 0.70 | 0.45 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; moderate strain Δ 25.8
|
|
| T17 T17 |
|
140 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_78
44% of hydrophobic surface appears solvent-exposed (14/32 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 4 protein contact clashes; moderate strain Δ 26.2, geometry warning, and strain ΔE = 26.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 504.7 · logP 2.13 · TPSA 55.4
|
32.4 | 0.39 | 1.9072 | -0.6288 | 14 | 26.24 | 504.7 | 2.13 | 55.4 | 6.089 | 0.58 | 0.53 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 4 protein contact clashes; moderate strain Δ 26.2
|
|
| T17 T17 |
|
141 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_20
47% of hydrophobic surface appears solvent-exposed (14/30 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 26.4, geometry warning, and strain ΔE = 26.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 476.7 · logP 0.96 · TPSA 41.2
|
31.5 | 0.30 | 3.0347 | -0.6585 | 14 | 26.39 | 476.7 | 0.96 | 41.2 | 5.478 | 0.70 | 0.45 | 0 | 0 | 0.56 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 26.4
|
|
| T17 T17 |
|
142 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45901563
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 523.3 · logP 4.14 · TPSA 52.6
|
28.8 | 0.38 | 2.3413 | -0.8482 | 7 | 18.00 | 523.3 | 4.14 | 52.6 | 2.302 | 0.14 | 0.30 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T17 T17 |
|
143 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z27619347
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.2, geometry warning, and strain ΔE = 25.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 527.7 · logP 2.37 · TPSA 113.1
|
43.5 | 0.33 | 2.5850 | -0.6611 | 1 | 25.16 | 527.7 | 2.37 | 113.1 | 2.875 | 0.55 | 0.62 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.2
|
|
| T17 T17 |
|
144 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49628846
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 22.7, geometry warning, and strain ΔE = 22.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 4.45 · TPSA 74.8
|
40.4 | 0.25 | 3.0354 | -0.8551 | 2 | 22.72 | 344.4 | 4.45 | 74.8 | 2.226 | 0.62 | 0.61 | 0 | 0 | 0.43 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 22.7
|
|
| T17 T17 |
|
145 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1546624232
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 494.6 · logP 3.17 · TPSA 87.5
|
39.8 | 0.30 | 3.4018 | -0.7055 | 3 | 19.21 | 494.6 | 3.17 | 87.5 | 3.024 | 0.44 | 0.65 | 0 | 0 | 0.37 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 2 protein clashes
|
|
| T17 T17 |
|
146 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z16383985
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 397.4 · logP 3.04 · TPSA 105.8
|
39.7 | 0.18 | 4.4515 | -0.8259 | 3 | 19.63 | 397.4 | 3.04 | 105.8 | 2.973 | 0.58 | 0.75 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
|
|
| T17 T17 |
|
147 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK214
Hydrophobic burial looks adequate: 30% exposed (7/23 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.2, geometry warning, and strain ΔE = 20.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.80 · TPSA 100.6
|
38.6 | 0.27 | 3.4096 | -0.7676 | 7 | 20.22 | 409.5 | 3.80 | 100.6 | 3.606 | 0.66 | 0.60 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.2
|
|
| T17 T17 |
|
148 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_Babesia_59
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 371.4 · logP 2.53 · TPSA 103.8
|
36.9 | 0.26 | 3.4883 | -0.8754 | 1 | 23.41 | 371.4 | 2.53 | 103.8 | 2.915 | 0.58 | 0.28 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 23.4
|
|
| T17 T17 |
|
149 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49620424
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 31.9, geometry warning, and strain ΔE = 31.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 3.80 · TPSA 82.2
|
41.0 | 0.35 | 2.6163 | -0.9844 | 3 | 31.95 | 344.4 | 3.80 | 82.2 | 2.292 | 0.58 | 0.57 | 0 | 0 | 0.32 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 31.9
|
|
| T17 T17 |
|
150 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK190
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 26.2, geometry warning, and strain ΔE = 26.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 520.1 · logP 7.11 · TPSA 58.6
|
33.5 | 0.37 | 2.4484 | -0.7405 | 6 | 26.20 | 520.1 | 7.11 | 58.6 | 2.932 | 0.04 | 0.78 | 0 | 0 | 0.25 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 26.2
|
|
| T17 T17 |
|
151 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1343
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 24.9, geometry warning, and strain ΔE = 24.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 295.3 · logP 1.71 · TPSA 89.9
|
35.9 | 0.23 | 3.9567 | -1.0930 | 3 | 24.92 | 295.3 | 1.71 | 89.9 | 3.193 | 0.70 | 0.36 | 0 | 0 | 0.76 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 24.9
|
|
| T17 T17 |
|
152 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC490
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 20.3, geometry warning, and strain ΔE = 20.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 3.58 · TPSA 92.4
|
38.3 | 0.32 | 3.2743 | -0.9363 | 4 | 20.26 | 394.5 | 3.58 | 92.4 | 3.774 | 0.58 | 0.46 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 20.3
|
|
| T17 T17 |
|
153 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z55466823
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; high strain Δ 31.7, geometry warning, and strain ΔE = 31.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 414.5 · logP 1.19 · TPSA 123.4
|
34.2 | 0.23 | 3.9525 | -0.8343 | 4 | 31.66 | 414.5 | 1.19 | 123.4 | 4.019 | 0.63 | 0.34 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; high strain Δ 31.7
|
|
| T17 T17 |
|
154 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z19316109
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 21.1, geometry warning, and strain ΔE = 21.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 444.5 · logP 2.38 · TPSA 101.5
|
36.2 | 0.19 | 4.4021 | -0.7478 | 8 | 21.07 | 444.5 | 2.38 | 101.5 | 2.200 | 0.55 | 0.64 | 0 | 0 | 0.46 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 21.1
|
|
| T17 T17 |
|
155 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK172
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 20 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 438.6 · logP 5.92 · TPSA 63.7
|
33.1 | 0.27 | 3.3214 | -0.7315 | 5 | 14.20 | 438.6 | 5.92 | 63.7 | 3.831 | 0.28 | 0.56 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 20 clashes; 1 protein clash
|
|
| T17 T17 |
|
156 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_MAC_39
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 23.7, geometry warning, and strain ΔE = 23.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 376.8 · logP 3.66 · TPSA 100.9
|
39.6 | 0.25 | 3.7541 | -0.8237 | 6 | 23.74 | 376.8 | 3.66 | 100.9 | 2.634 | 0.58 | 0.73 | 0 | 0 | 0.40 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 23.7
|
|
| T17 T17 |
|
157 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2022_36
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 25 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 540.6 · logP 5.65 · TPSA 89.0
|
32.6 | 0.22 | 4.0361 | -0.6004 | 2 | 18.15 | 540.6 | 5.65 | 89.0 | 3.323 | 0.11 | 0.70 | 0 | 0 | 0.27 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 25 clashes; 1 protein clash
|
|
| T17 T17 |
|
158 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK61
Hydrophobic burial looks adequate: 34% exposed (10/29 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 1 protein clash; high strain Δ 64.2, geometry warning, and strain ΔE = 64.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 495.6 · logP 2.52 · TPSA 91.5
|
31.1 | 0.35 | 2.3713 | -0.7087 | 10 | 64.23 | 495.6 | 2.52 | 91.5 | 4.303 | 0.58 | 0.51 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; high strain Δ 64.2
|
|
| T17 T17 |
|
159 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_395
38% of hydrophobic surface appears solvent-exposed (9/24 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.7, geometry warning, and strain ΔE = 27.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 366.5 · logP 2.36 · TPSA 44.9
|
31.8 | 0.31 | 3.0341 | -0.8296 | 9 | 27.70 | 366.5 | 2.36 | 44.9 | 5.001 | 0.65 | 0.25 | 0 | 0 | 0.76 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.7
|
|
| T17 T17 |
|
160 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK216
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 22.0, geometry warning, and strain ΔE = 22.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.80 · TPSA 100.6
|
36.9 | 0.29 | 3.2694 | -0.8099 | 6 | 21.97 | 409.5 | 3.80 | 100.6 | 3.511 | 0.66 | 0.36 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 22.0
|
|
| T17 T17 |
|
161 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_316
Hydrophobic burial looks adequate: 31% exposed (9/29 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 21.5, geometry warning, and strain ΔE = 21.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.6 · logP 4.18 · TPSA 42.9
|
33.7 | 0.37 | 2.6160 | -0.8151 | 9 | 21.52 | 426.6 | 4.18 | 42.9 | 4.546 | 0.43 | 0.51 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 21.5
|
|
| T17 T17 |
|
162 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0624
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 26.3, geometry warning, and strain ΔE = 26.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.5 · logP 2.16 · TPSA 144.0
|
34.2 | 0.31 | 3.8084 | -0.9927 | 4 | 26.30 | 395.5 | 2.16 | 144.0 | 2.694 | 0.42 | 0.41 | 0 | 0 | 0.45 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 26.3
|
|
| T17 T17 |
|
163 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_82
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 1 protein clash; high strain Δ 32.3, geometry warning, and strain ΔE = 32.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 504.7 · logP 2.13 · TPSA 55.4
|
36.6 | 0.31 | 2.8481 | -0.6140 | 3 | 32.28 | 504.7 | 2.13 | 55.4 | 5.872 | 0.58 | 0.52 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 1 protein clash; high strain Δ 32.3
|
|
| T17 T17 |
|
164 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_186
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 2 protein clashes; high strain Δ 46.8, geometry warning, and strain ΔE = 46.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 502.7 · logP 1.49 · TPSA 41.2
|
35.0 | 0.23 | 3.9608 | -0.6092 | 8 | 46.84 | 502.7 | 1.49 | 41.2 | 5.824 | 0.70 | 0.78 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 2 protein clashes; high strain Δ 46.8
|
|
| T17 T17 |
|
165 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_84
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 1 protein clash; high strain Δ 40.5, geometry warning, and strain ΔE = 40.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 477.7 · logP 3.01 · TPSA 54.2
|
34.2 | 0.34 | 2.6422 | -0.7119 | 4 | 40.52 | 477.7 | 3.01 | 54.2 | 4.820 | 0.47 | 0.46 | 0 | 0 | 0.60 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; high strain Δ 40.5
|
|
| T17 T17 |
|
166 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK28
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 356.5 · logP 4.61 · TPSA 58.9
|
30.7 | 0.16 | 4.7488 | -0.9044 | 11 | 13.71 | 356.5 | 4.61 | 58.9 | 2.688 | 0.58 | 0.46 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 4 protein clashes
|
|
| T17 T17 |
|
167 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK153
Hydrophobic burial looks adequate: 29% exposed (7/24 atoms). No penalty flagged.
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 4.74 · TPSA 96.0
|
32.9 | 0.27 | 3.5125 | -0.7957 | 7 | 17.10 | 409.5 | 4.74 | 96.0 | 3.552 | 0.48 | 0.38 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes
|
|
| T17 T17 |
|
168 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK160
Hydrophobic burial looks adequate: 35% exposed (8/23 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 4.14 · TPSA 108.8
|
33.8 | 0.32 | 2.7219 | -0.7747 | 8 | 17.07 | 410.5 | 4.14 | 108.8 | 3.520 | 0.48 | 0.40 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash
|
|
| T17 T17 |
|
169 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_229
Hydrophobic burial looks adequate: 28% exposed (9/32 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 2 protein clashes; high strain Δ 38.8, geometry warning, and strain ΔE = 38.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 489.8 · logP 0.64 · TPSA 16.6
|
31.0 | 0.25 | 3.6152 | -0.6690 | 9 | 38.76 | 489.8 | 0.64 | 16.6 | 6.534 | 0.70 | 0.49 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 2 protein clashes; high strain Δ 38.8
|
|
| T17 T17 |
|
170 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_188
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 18 clashes; 1 protein clash; moderate strain Δ 28.9, geometry warning, and strain ΔE = 28.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 501.7 · logP 2.91 · TPSA 40.0
|
32.2 | 0.32 | 2.5177 | -0.6114 | 15 | 28.90 | 501.7 | 2.91 | 40.0 | 4.976 | 0.58 | 0.69 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 18 clashes; 1 protein clash; moderate strain Δ 28.9
|
|
| T17 T17 |
|
171 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_222
43% of hydrophobic surface appears solvent-exposed (13/30 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 17 clashes; 5 protein contact clashes; moderate strain Δ 26.1, geometry warning, and strain ΔE = 26.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 477.7 · logP 1.38 · TPSA 38.4
|
32.4 | 0.32 | 2.1620 | -0.6354 | 13 | 26.09 | 477.7 | 1.38 | 38.4 | 5.510 | 0.70 | 0.51 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 5 protein contact clashes; moderate strain Δ 26.1
|
|
| T17 T17 |
|
172 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_57
Hydrophobic burial looks adequate: 33% exposed (11/33 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 17 clashes; 1 protein clash; high strain Δ 34.7, geometry warning, and strain ΔE = 34.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 516.8 · logP 1.98 · TPSA 32.4
|
32.7 | 0.34 | 2.3845 | -0.6218 | 11 | 34.70 | 516.8 | 1.98 | 32.4 | 5.564 | 0.70 | 0.42 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 1 protein clash; high strain Δ 34.7
|
|
| T17 T17 |
|
173 | 8 Front 8 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_313
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 17 clashes; 2 protein contact clashes; high strain Δ 34.3, geometry warning, and strain ΔE = 34.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 579.9 · logP 5.20 · TPSA 31.2
|
23.9 | 0.39 | 1.6863 | -0.5315 | 16 | 34.29 | 579.9 | 5.20 | 31.2 | 5.779 | 0.11 | 0.71 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 2 protein contact clashes; high strain Δ 34.3
|
|
| T17 T17 |
|
174 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z18509545
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 23.1, geometry warning, and strain ΔE = 23.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 2.78 · TPSA 84.9
|
41.9 | 0.31 | 2.9076 | -0.7654 | 2 | 23.10 | 410.5 | 2.78 | 84.9 | 2.948 | 0.55 | 0.61 | 0 | 0 | 0.72 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 23.1
|
|
| T17 T17 |
|
175 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z295463994
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.3 · logP 3.37 · TPSA 78.9
|
37.3 | 0.29 | 2.8955 | -0.9007 | 7 | 16.33 | 333.3 | 3.37 | 78.9 | 2.828 | 0.58 | 0.52 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
|
|
| T17 T17 |
|
176 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_92
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 1 protein clash; high strain Δ 32.1, geometry warning, and strain ΔE = 32.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 467.6 · logP 4.19 · TPSA 108.1
|
37.2 | 0.32 | 2.7493 | -0.7219 | 2 | 32.14 | 467.6 | 4.19 | 108.1 | 3.276 | 0.28 | 0.72 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 1 protein clash; high strain Δ 32.1
|
|
| T17 T17 |
|
177 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_Leishmania_257
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 44.3, geometry warning, and strain ΔE = 44.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.3 · logP 2.34 · TPSA 81.8
|
36.8 | 0.31 | 2.9017 | -0.7762 | 4 | 44.33 | 432.3 | 2.34 | 81.8 | 3.131 | 0.58 | 0.43 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 44.3
|
|
| T17 T17 |
|
178 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_127
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; high strain Δ 36.8, geometry warning, and strain ΔE = 36.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 427.5 · logP 3.09 · TPSA 87.3
|
36.3 | 0.32 | 2.8538 | -0.7104 | 6 | 36.81 | 427.5 | 3.09 | 87.3 | 3.193 | 0.55 | 0.45 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; high strain Δ 36.8
|
|
| T17 T17 |
|
179 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56821783
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 21.3, geometry warning, and strain ΔE = 21.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 2.06 · TPSA 75.8
|
37.2 | 0.29 | 3.3784 | -1.0087 | 5 | 21.26 | 331.4 | 2.06 | 75.8 | 2.217 | 0.58 | 0.36 | 0 | 0 | 0.82 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 21.3
|
|
| T17 T17 |
|
180 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56890899
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 1 protein clash; high strain Δ 39.4, geometry warning, and strain ΔE = 39.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.5 · logP 4.07 · TPSA 84.8
|
35.9 | 0.24 | 3.3132 | -0.7686 | 1 | 39.39 | 418.5 | 4.07 | 84.8 | 2.288 | 0.36 | 0.66 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 1 protein clash; high strain Δ 39.4
|
|
| T17 T17 |
|
181 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57907181
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 29.9, geometry warning, and strain ΔE = 29.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 471.5 · logP 4.29 · TPSA 107.9
|
35.9 | 0.32 | 2.7416 | -0.6624 | 3 | 29.87 | 471.5 | 4.29 | 107.9 | 2.979 | 0.25 | 0.66 | 0 | 0 | 0.37 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 29.9
|
|
| T17 T17 |
|
182 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK136
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 4.98 · TPSA 85.0
|
36.9 | 0.33 | 3.0256 | -0.8674 | 10 | 18.60 | 409.5 | 4.98 | 85.0 | 3.291 | 0.48 | 0.73 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
|
|
| T17 T17 |
|
183 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56833421
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 54.9, geometry warning, and strain ΔE = 54.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.4 · logP 0.79 · TPSA 127.5
|
35.1 | 0.24 | 3.8477 | -0.8699 | 8 | 54.86 | 378.4 | 0.79 | 127.5 | 2.691 | 0.66 | 0.64 | 0 | 0 | 0.34 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 54.9
|
|
| T17 T17 |
|
184 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z68348244
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; high strain Δ 52.9, geometry warning, and strain ΔE = 52.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.3 · logP 1.83 · TPSA 124.6
|
34.5 | 0.20 | 4.0297 | -0.8222 | 2 | 52.93 | 432.3 | 1.83 | 124.6 | 2.581 | 0.60 | 0.63 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 9 clashes; 3 protein clashes; high strain Δ 52.9
|
|
| T17 T17 |
|
185 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z18551701
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 26.8, geometry warning, and strain ΔE = 26.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 498.1 · logP 4.09 · TPSA 88.6
|
36.5 | 0.32 | 2.3456 | -0.7442 | 2 | 26.85 | 498.1 | 4.09 | 88.6 | 2.776 | 0.25 | 0.68 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 26.8
|
|
| T17 T17 |
|
186 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK194
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 2 protein clashes; moderate strain Δ 22.2, geometry warning, and strain ΔE = 22.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.0 · logP 4.48 · TPSA 63.2
|
34.6 | 0.25 | 3.8514 | -0.8468 | 8 | 22.23 | 428.0 | 4.48 | 63.2 | 3.846 | 0.43 | 0.71 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 2 protein clashes; moderate strain Δ 22.2
|
|
| T17 T17 |
|
187 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z32448862
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; 2 cofactor-context clashes; high strain Δ 35.5, geometry warning, and strain ΔE = 35.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 462.3 · logP 3.91 · TPSA 97.4
|
34.7 | 0.13 | 4.8894 | -0.8363 | 1 | 35.52 | 462.3 | 3.91 | 97.4 | 1.990 | 0.44 | 0.65 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; 2 cofactor-context clashes; high strain Δ 35.5
|
|
| T17 T17 |
|
188 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56983508
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; high strain Δ 35.5, geometry warning, and strain ΔE = 35.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 466.0 · logP 3.06 · TPSA 78.9
|
32.6 | 0.33 | 2.6037 | -0.7306 | 8 | 35.51 | 466.0 | 3.06 | 78.9 | 2.137 | 0.44 | 0.33 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash; high strain Δ 35.5
|
|
| T17 T17 |
|
189 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1501485351
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; high strain Δ 33.7, geometry warning, and strain ΔE = 33.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 365.8 · logP 2.66 · TPSA 96.0
|
33.2 | 0.24 | 4.2384 | -0.9684 | 8 | 33.66 | 365.8 | 2.66 | 96.0 | 3.153 | 0.62 | 0.40 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; high strain Δ 33.7
|
|
| T17 T17 |
|
190 | 9 Front 9 |
Binding
Weak
Geometry
Bad
Data
Complete
Action
Reject
|
Z32421752
reasonable synthesis profile
DetailsWhy selected: well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 3 protein clashes; 2 cofactor-context clashes; moderate strain Δ 23.6, geometry warning, and strain ΔE = 23.6 kcal/mol.
Action: Reject this pose unless there is a compelling external reason to rescue the chemotype.
MW 403.9 · logP 0.56 · TPSA 149.4
|
33.8 | 0.19 | 4.7803 | -0.9548 | 7 | 23.61 | 403.9 | 0.56 | 149.4 | 1.963 | 0.60 | 0.37 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; 2 cofactor-context clashes; moderate strain Δ 23.6
|
|
| T17 T17 |
|
191 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TC1_87
well-buried hydrophobics
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 39.2, geometry warning, and strain ΔE = 39.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 448.6 · logP 3.83 · TPSA 47.7
|
31.8 | 0.35 | 2.1251 | -0.7156 | 6 | 39.17 | 448.6 | 3.83 | 47.7 | 3.792 | 0.52 | 0.37 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 39.2
|
|
| T17 T17 |
|
192 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z44856621
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; 4 cofactor-context clashes; high strain Δ 37.8, geometry warning, and strain ΔE = 37.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 534.5 · logP 5.11 · TPSA 105.4
|
30.8 | 0.32 | 3.2078 | -0.8283 | 5 | 37.84 | 534.5 | 5.11 | 105.4 | 2.452 | 0.07 | 0.66 | 0 | 0 | 0.25 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; 4 cofactor-context clashes; high strain Δ 37.8
|
|
| T17 T17 |
|
193 | 9 Front 9 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_Schistosoma_116
Hydrophobic burial looks adequate: 32% exposed (8/25 atoms). No penalty flagged.
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 20 clashes; 1 protein clash; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.5 · logP 3.32 · TPSA 81.6
|
27.6 | 0.27 | 3.3713 | -0.7786 | 8 | 21.57 | 428.5 | 3.32 | 81.6 | 5.443 | 0.55 | 0.28 | 0 | 0 | 0.70 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 20 clashes; 1 protein clash; moderate strain Δ 21.6
|
|
| T17 T17 |
|
194 | 10 Front 10 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z19160931
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 27.4, geometry warning, and strain ΔE = 27.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 407.5 · logP 2.60 · TPSA 124.5
|
42.7 | 0.30 | 3.2167 | -0.9047 | 2 | 27.39 | 407.5 | 2.60 | 124.5 | 2.697 | 0.52 | 0.80 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 27.4
|
|
| T17 T17 |
|
195 | 10 Front 10 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49547615
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 25.3, geometry warning, and strain ΔE = 25.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 425.4 · logP 3.47 · TPSA 90.6
|
40.2 | 0.28 | 2.8848 | -0.7008 | 5 | 25.25 | 425.4 | 3.47 | 90.6 | 2.397 | 0.55 | 0.70 | 0 | 0 | 0.39 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 25.3
|
|
| T17 T17 |
|
196 | 10 Front 10 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TbNat_74
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 43.2 and strain ΔE = 43.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 460.7 · logP 4.40 · TPSA 98.0
|
40.3 | 0.24 | 3.7280 | -0.7415 | 7 | 43.16 | 460.7 | 4.40 | 98.0 | 4.975 | 0.51 | 0.68 | 0 | 0 | 0.46 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 10 clashes; 2 protein clashes; high strain Δ 43.2
|
|
| T17 T17 |
|
197 | 10 Front 10 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z17189141
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 29.7, geometry warning, and strain ΔE = 29.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 452.5 · logP 3.18 · TPSA 114.9
|
37.5 | 0.30 | 3.3265 | -0.7314 | 7 | 29.70 | 452.5 | 3.18 | 114.9 | 2.375 | 0.44 | 0.70 | 0 | 0 | 0.41 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 29.7
|
|
| T17 T17 |
|
198 | 10 Front 10 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_Schistosoma_101
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 435.3 · logP 4.72 · TPSA 120.6
|
36.6 | 0.28 | 2.9006 | -0.8142 | 3 | 19.08 | 435.3 | 4.72 | 120.6 | 2.702 | 0.33 | 0.65 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash
|
|
| T17 T17 |
|
199 | 10 Front 10 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_Leish_41
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; high strain Δ 42.0, geometry warning, and strain ΔE = 42.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.5 · logP 2.24 · TPSA 113.7
|
37.8 | 0.29 | 3.4111 | -0.7675 | 3 | 42.00 | 430.5 | 2.24 | 113.7 | 2.836 | 0.55 | 0.54 | 0 | 0 | 0.50 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; high strain Δ 42.0
|
|
| T17 T17 |
|
200 | 10 Front 10 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_60
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 3 protein clashes; high strain Δ 33.2, geometry warning, and strain ΔE = 33.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 3.08 · TPSA 73.4
|
34.0 | 0.22 | 4.1541 | -0.8585 | 10 | 33.18 | 344.4 | 3.08 | 73.4 | 4.515 | 0.62 | 0.76 | 0 | 0 | 0.60 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 3 protein clashes; high strain Δ 33.2
|
Score composition ▼ show
Docking 28% · final rank, interaction-normalized score, raw docking score
Burial 18% · absolute exposed hydrophobic atom count (lower is better)
Strain 14% · strain delta, intra score, geometry sanity
Safety / ADMET 18% · ADMET score with hERG/AMES/DILI/bioaccumulation penalties — Pareto objective
Ecotoxicology 9% · fish/daphnia/algae LC50 classes + bioaccumulation + persistence — Pareto objective
Synthesis 10% · SA score when available, otherwise Fsp3 proxy
Native similarity 12% · contact and H-bond recall when a native reference exists
Diversity shortlist 0% · cached shortlist already includes the novelty-aware selection step
How ranking works: Pareto fronts are built from six default objectives — docking score, ligand efficiency, burial depth, strain energy, ADMET safety, and ecotoxicology (fish/daphnia/algae LC₅₀ + bioaccumulation + persistence). Front 1 contains non-dominated ligands: no other ligand beats them across all six objectives simultaneously. Inside each front, ligands are ordered by a compromise score with explicit penalties for PAINS, reactivity, toxicity alerts, geometry warnings, excluded poses, and artifact annotations. The top 200 are returned using a diversity-aware selection step.
Methodology ▼ show
1. Candidate definition. For each target we keep one best pose per ligand, so the shortlist is not inflated by many similar poses of the same compound.
2. Objective set. Each ligand is evaluated across docking quality, absolute nonpolar solvent exposure (`n_exposed`), conformational strain, native-like interaction similarity when a native reference exists, safety and ecotoxicology, synthesizability, and general developability indicators such as QED.
2a. SASA / burial source. `SASA: done` = cached FreeSASA metrics. `queued/running` = background worker scheduled. `failed` = worker failed. `missing` = no SASA cached yet.
3. Liability penalties. PAINS motifs, reactive groups, toxicity alerts, artifact annotations, geometry warnings, and excluded-pose flags reduce the compromise score and are shown explicitly.
4. Pareto ranking. Front 1 = non-dominated ligands (no other ligand is better in all objectives simultaneously). Lower front number = more balanced profile.
5. Missing SASA handling. Missing SASA lowers `Data completeness` to `Provisional` but does not automatically reject a ligand. Binding and geometry axes stay independent.
6. Compromise score. `100 × clamp(weighted positive − liability penalty − missing-data penalty)`. Weights: docking 28%, burial 18%, strain 14%, safety/ecotox 18%, synthesis 10%, native similarity 12% (when reference exists).
7. Component details. Docking = `final_rank_score` 55% + `score_inter_norm` 30% + raw `score` 15%. Strain = `strain_delta` 55% + `score_intra_norm` 30% + geometry sanity 15%.
8. Final shortlist. Top 50 per target taken front-by-front with diversity-aware selection — near-duplicate analogs do not dominate.
How to read the table. `Pareto` = non-dominated layer, `Compromise` = within-front ordering score, `n_exposed` = burial proxy (lower is better), `Strain dE` = conformational stress, colored dots = quick green/orange/red cue.
How to use selections. Mark compounds row-by-row, save to `Current`/`Temp`/`A/B/C` sets, export to SDF/XLSX/CSV, or send to downstream analysis pages.