FAIRMol

Ligand prioritization

Interactive top-50 shortlist per target built from a transparent multi-objective workflow. It combines docking quality, absolute exposed hydrophobic atoms, low strain, safety/ecotox, synthesizability, and native-contact similarity when a native reference exists, then uses Pareto fronts plus a compromise score to expose the most balanced ligands.

DB SELECTION
200 shortlisted rows 1 targets
L. donovani rab5a · T22
L. donovani
Protein: Rab5a GTPase
Targets
1
each capped at 50 ligands
Best-pose candidates
533
one best pose per ligand per target
Synth metric
SA score
direct SA metric
Absolute burial proxy
n_exposed
absolute exposed hydrophobic atoms, not fraction
Pareto front 1
28
non-dominated ligands across all selected targets
Burial source
FreeSASA 200
Proxy 0 · Missing 0
Metrics coverage
Done 200
Pending 0 · Failed 0 · Missing 0
Diversity shortlist
Novelty 0.45
High novelty 200 · Close analogs 0
New vs legacy top 50
Added 2 · Dropped 2
Stayed 198 of 200 legacy picks
T22
Native Front 1: 28
200 / 533 shortlisted
Best: Z19547115 · score 56.3
Pareto layers observed: 10
Metrics: done 200 · pending 0 · failed 0 · missing 0
Diversity: novelty 0.45 · close analogs 0
New vs legacy: added 2 · dropped 2 · stayed 198/200
Added: Z2417557127, Z30488659 · Dropped: MK220, MK218
Table view
Switch between a compact decision view, medicinal chemistry properties, and the full docking inspection layout.
Target 2D Rank Pareto Assessment Ligand Compromise Docking Final rank Inter norm n_exposed Strain dE MW cLogP TPSA SA score Safety Native sim PAINS Reactive QED SASA Flags
T22
T22
1 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19547115
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 373.5 · logP 1.67 · TPSA 71.3
56.3 0.69 1.1692 -1.2022 8 13.37 373.5 1.67 71.3 2.132 0.76 0.77 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 5 protein contact clashes
T22
T22
2 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC323
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 292.4 · logP 0.04 · TPSA 89.7
55.4 0.64 3.1444 -1.9351 2 13.83 292.4 0.04 89.7 2.951 0.70 0.68 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T22
T22
3 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1501485351
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.5, geometry warning, and strain ΔE = 23.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 365.8 · logP 2.66 · TPSA 96.0
55.2 0.68 1.7331 -1.4312 2 23.47 365.8 2.66 96.0 3.153 0.62 0.73 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.5
T22
T22
4 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29149152
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 0.94 · TPSA 86.4
54.2 0.61 1.7970 -1.2303 6 13.84 354.4 0.94 86.4 2.217 0.73 0.77 0 0 0.89
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T22
T22
5 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55696460
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 316.3 · logP 1.85 · TPSA 125.1
52.8 0.51 2.6730 -1.3796 1 22.92 316.3 1.85 125.1 1.865 0.70 0.69 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 22.9
T22
T22
6 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56841578
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.5 · logP 1.86 · TPSA 55.4
50.6 0.54 3.0608 -1.6011 6 18.32 331.5 1.86 55.4 2.910 0.76 0.71 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes
T22
T22
7 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49615771
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 256.3 · logP 2.44 · TPSA 85.4
50.8 0.67 2.1250 -1.6479 8 9.54 256.3 2.44 85.4 2.378 0.73 0.42 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T22
T22
8 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_181
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 367.4 · logP 1.58 · TPSA 128.2
52.2 0.43 3.6943 -1.3215 0 25.57 367.4 1.58 128.2 2.538 0.66 0.86 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.6
T22
T22
9 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC408
native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 9 protein contact clashes, geometry warning, and strain ΔE = 19.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.4 · logP 2.25 · TPSA 104.5
50.1 0.69 1.2690 -1.2066 9 19.11 361.4 2.25 104.5 3.275 0.58 0.72 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 9 protein contact clashes
T22
T22
10 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z115639124
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 290.4 · logP 3.10 · TPSA 59.1
50.1 0.52 3.1763 -1.5911 4 17.09 290.4 3.10 59.1 2.032 0.73 0.52 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T22
T22
11 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0254
reasonable synthesis profile
Details
Why selected: Good docking score and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 27.4, geometry warning, and strain ΔE = 27.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.1 · logP 0.41 · TPSA 98.5
49.7 0.70 3.0953 -2.2858 7 27.41 278.1 0.41 98.5 2.312 0.73 0.36 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 27.4
T22
T22
12 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_39
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; high strain Δ 32.3, geometry warning, and strain ΔE = 32.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 3.04 · TPSA 46.1
49.4 0.57 2.1158 -1.3198 1 32.27 332.4 3.04 46.1 3.155 0.62 0.61 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; high strain Δ 32.3
T22
T22
13 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18754651
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 323.4 · logP 3.18 · TPSA 54.5
49.0 0.56 2.5251 -1.3751 2 19.52 323.4 3.18 54.5 2.092 0.62 0.36 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T22
T22
14 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25103234
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.4 · logP 2.59 · TPSA 61.3
49.1 0.43 3.8016 -1.5005 5 6.70 308.4 2.59 61.3 2.251 0.76 0.55 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T22
T22
15 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49547294
strong docking, reasonable synthesis profile
Details
Why selected: Strong docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 12 protein contact clashes; moderate strain Δ 28.3, geometry warning, and strain ΔE = 28.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 257.2 · logP 1.26 · TPSA 94.8
48.9 0.77 1.3212 -1.6128 13 28.34 257.2 1.26 94.8 2.196 0.73 0.44 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 12 protein contact clashes; moderate strain Δ 28.3
T22
T22
16 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC324
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 305.4 · logP 0.95 · TPSA 76.8
53.1 0.71 2.2654 -1.8252 9 11.67 305.4 0.95 76.8 2.783 0.70 0.73 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T22
T22
17 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z241739672
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.9 · logP 3.05 · TPSA 66.5
47.4 0.48 3.1855 -1.2975 7 13.43 378.9 3.05 66.5 1.834 0.65 0.60 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T22
T22
18 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56832742
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 70.7, geometry warning, and strain ΔE = 70.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.5 · logP 3.67 · TPSA 124.9
47.1 0.55 2.3607 -1.2469 0 70.70 395.5 3.67 124.9 3.373 0.58 0.78 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 70.7
T22
T22
19 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z116369884
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 5 clashes; 5 protein clashes, geometry warning, and strain ΔE = 18.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 215.2 · logP -1.06 · TPSA 115.3
48.5 0.60 4.0086 -2.2910 7 18.53 215.2 -1.06 115.3 1.773 0.67 0.57 0 0 0.33
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 5 clashes; 5 protein clashes
T22
T22
20 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27682886
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.3 · logP 1.65 · TPSA 89.3
48.9 0.45 3.7065 -1.4640 7 12.07 308.3 1.65 89.3 1.626 0.73 0.67 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T22
T22
21 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z124328460
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 20.4, geometry warning, and strain ΔE = 20.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 2.47 · TPSA 101.3
49.6 0.42 3.7132 -1.3584 1 20.40 331.4 2.47 101.3 1.884 0.62 0.70 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 20.4
T22
T22
22 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_ACDS_29
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 326.4 · logP 2.77 · TPSA 106.8
44.0 0.57 2.0970 -1.2124 13 9.10 326.4 2.77 106.8 3.078 0.58 0.69 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash
T22
T22
23 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC89
native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash and strain ΔE = 20.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 429.6 · logP 3.56 · TPSA 91.4
43.9 0.56 2.1162 -1.0329 23 19.97 429.6 3.56 91.4 4.540 0.70 0.72 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 6 clashes; 1 protein clash
T22
T22
24 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0565
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 28.8, geometry warning, and strain ΔE = 28.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP 0.15 · TPSA 144.2
45.1 0.54 3.3258 -1.6780 0 28.82 281.3 0.15 144.2 2.469 0.53 0.39 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 28.8
T22
T22
25 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z28346745
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 24.9, geometry warning, and strain ΔE = 24.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.5 · logP 4.56 · TPSA 88.8
44.0 0.61 2.0852 -1.0775 10 24.87 416.5 4.56 88.8 2.447 0.36 0.65 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 24.9
T22
T22
26 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45875055
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 433.6 · logP 1.84 · TPSA 71.1
44.6 0.45 3.1230 -1.1165 6 15.12 433.6 1.84 71.1 2.193 0.67 0.58 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash
T22
T22
27 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_110
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.4 · logP 3.82 · TPSA 110.0
41.4 0.37 4.3986 -1.1721 11 17.53 395.4 3.82 110.0 2.508 0.58 0.70 0 0 0.52
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
T22
T22
28 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57300837
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.9 · logP 4.27 · TPSA 66.5
40.5 0.36 3.8782 -1.2091 3 13.42 386.9 4.27 66.5 2.166 0.43 0.44 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T22
T22
29 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_35
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes; high strain Δ 38.0, geometry warning, and strain ΔE = 38.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 301.2 · logP 0.51 · TPSA 136.4
48.9 0.56 3.0373 -1.6924 4 38.03 301.2 0.51 136.4 3.504 0.66 0.80 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; high strain Δ 38.0
T22
T22
30 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_169
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.3 · logP 2.70 · TPSA 74.6
51.6 0.66 1.3414 -1.3810 8 17.87 291.3 2.70 74.6 2.040 0.73 0.65 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T22
T22
31 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK175
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; high strain Δ 32.2, geometry warning, and strain ΔE = 32.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 370.5 · logP 0.08 · TPSA 112.2
48.8 0.43 3.8087 -1.4014 4 32.17 370.5 0.08 112.2 2.823 0.73 0.81 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; high strain Δ 32.2
T22
T22
32 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC345
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 3 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 222.2 · logP -0.19 · TPSA 107.0
47.8 0.68 2.9555 -2.1134 10 12.45 222.2 -0.19 107.0 3.167 0.73 0.43 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes
T22
T22
33 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
CKP-35
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 240.3 · logP 2.50 · TPSA 58.3
46.7 0.55 3.2508 -1.7641 8 13.29 240.3 2.50 58.3 1.956 0.73 0.40 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T22
T22
34 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1053
100% of hydrophobic surface is solvent-exposed (10/10 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Good docking score and good contact coverage.
Main concern: geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 23.2, geometry warning, and strain ΔE = 23.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 286.7 · logP -1.07 · TPSA 113.0
45.9 0.68 2.2098 -1.6805 10 23.21 286.7 -1.07 113.0 3.901 0.73 0.35 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 23.2
T22
T22
35 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30858102
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.9 · logP 3.17 · TPSA 89.3
48.7 0.55 3.4329 -1.5933 8 14.40 394.9 3.17 89.3 2.018 0.58 0.79 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T22
T22
36 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_174
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 28.9, geometry warning, and strain ΔE = 28.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.4 · logP 3.90 · TPSA 74.8
46.5 0.55 1.8145 -1.2074 5 28.87 347.4 3.90 74.8 1.967 0.62 0.55 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 28.9
T22
T22
37 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30857987
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.8 · logP 1.89 · TPSA 89.3
50.4 0.54 3.0587 -1.4892 9 13.79 352.8 1.89 89.3 1.746 0.70 0.78 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T22
T22
38 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30932461
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 358.4 · logP 1.37 · TPSA 119.5
48.0 0.39 4.6972 -1.4959 7 15.78 358.4 1.37 119.5 1.955 0.70 0.83 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 4 protein clashes
T22
T22
39 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29673175
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; high strain Δ 36.1, geometry warning, and strain ΔE = 36.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 2.93 · TPSA 97.8
46.3 0.48 4.1273 -1.4900 5 36.07 331.4 2.93 97.8 2.691 0.58 0.65 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; high strain Δ 36.1
T22
T22
40 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49565795
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 3.37 · TPSA 61.8
45.7 0.55 2.2198 -1.1333 10 12.65 355.4 3.37 61.8 1.897 0.62 0.55 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T22
T22
41 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z118508076
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 31.8, geometry warning, and strain ΔE = 31.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 4.35 · TPSA 67.5
45.8 0.69 1.9204 -1.3701 10 31.77 355.4 4.35 67.5 2.597 0.43 0.63 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 31.8
T22
T22
42 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z443419884
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 483.0 · logP 3.99 · TPSA 84.4
45.4 0.54 2.1081 -1.0510 5 25.57 483.0 3.99 84.4 2.682 0.44 0.67 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.6
T22
T22
43 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56261632
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.3 · logP 3.01 · TPSA 101.3
49.5 0.55 3.1764 -1.5026 8 9.84 388.3 3.01 101.3 1.855 0.62 0.73 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T22
T22
44 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z53223394
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 312.4 · logP 0.32 · TPSA 118.0
47.9 0.52 3.1797 -1.5344 7 17.86 312.4 0.32 118.0 2.865 0.73 0.60 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
T22
T22
45 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44089721
68% of hydrophobic surface is solvent-exposed (13/19 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.4 · logP 2.08 · TPSA 37.6
44.6 0.66 1.6931 -1.4476 13 8.99 291.4 2.08 37.6 3.756 0.73 0.41 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T22
T22
46 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49605089
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.2, geometry warning, and strain ΔE = 24.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.5 · logP 1.14 · TPSA 132.2
45.1 0.46 3.3000 -1.2095 6 24.22 418.5 1.14 132.2 2.531 0.63 0.62 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.2
T22
T22
47 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_88
clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 3.59 · TPSA 49.2
44.0 0.51 2.7001 -1.3543 10 22.94 331.4 3.59 49.2 2.548 0.76 0.50 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 22.9
T22
T22
48 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0915
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 282.3 · logP -0.16 · TPSA 98.2
43.6 0.46 3.8953 -1.6195 11 9.66 282.3 -0.16 98.2 2.377 0.73 0.51 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T22
T22
49 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29406212
clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 346.4 · logP 1.83 · TPSA 70.8
45.7 0.55 2.7470 -1.4214 12 13.32 346.4 1.83 70.8 2.101 0.76 0.52 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash
T22
T22
50 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30564216
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; high strain Δ 31.9, geometry warning, and strain ΔE = 31.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.8 · logP 2.77 · TPSA 66.5
46.1 0.48 3.2271 -1.4427 3 31.93 352.8 2.77 66.5 1.753 0.65 0.51 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; high strain Δ 31.9
T22
T22
51 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56882059
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 424.5 · logP 4.23 · TPSA 77.8
44.6 0.57 2.4534 -1.1932 9 21.58 424.5 4.23 77.8 2.391 0.36 0.83 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 21.6
T22
T22
52 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0824
reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 23.1, geometry warning, and strain ΔE = 23.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 266.3 · logP 0.15 · TPSA 117.9
44.9 0.50 3.4354 -1.6822 6 23.07 266.3 0.15 117.9 2.355 0.73 0.36 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 23.1
T22
T22
53 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z193095380
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 24.9, geometry warning, and strain ΔE = 24.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.4 · logP 2.67 · TPSA 64.6
41.8 0.32 4.7547 -1.3693 5 24.89 333.4 2.67 64.6 2.379 0.65 0.53 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 24.9
T22
T22
54 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_138
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.4 · logP 3.52 · TPSA 112.7
44.0 0.23 4.7542 -1.0520 1 22.83 416.4 3.52 112.7 2.575 0.55 0.84 0 0 0.46
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 22.8
T22
T22
55 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56811143
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.9 · logP 3.53 · TPSA 75.3
42.6 0.48 2.9209 -1.1721 12 10.72 423.9 3.53 75.3 2.288 0.55 0.70 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T22
T22
56 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_32
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes; high strain Δ 43.7, geometry warning, and strain ΔE = 43.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 315.3 · logP 0.76 · TPSA 136.4
48.5 0.58 2.5587 -1.5357 5 43.75 315.3 0.76 136.4 3.508 0.66 0.83 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes; high strain Δ 43.7
T22
T22
57 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1537384907
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 4.36 · TPSA 59.1
41.0 0.61 1.9087 -1.2628 17 10.73 344.4 4.36 59.1 2.458 0.62 0.52 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T22
T22
58 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0624
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 30.5, geometry warning, and strain ΔE = 30.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.5 · logP 2.16 · TPSA 144.0
42.6 0.58 2.3851 -1.3038 6 30.48 395.5 2.16 144.0 2.694 0.42 0.65 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 30.5
T22
T22
59 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0822
reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.7, geometry warning, and strain ΔE = 31.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP -0.26 · TPSA 144.0
44.2 0.60 2.6818 -1.6945 6 31.67 281.3 -0.26 144.0 2.358 0.60 0.35 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.7
T22
T22
60 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31477806
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 5 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 290.3 · logP 1.26 · TPSA 89.3
45.0 0.33 4.8200 -1.5284 7 14.44 290.3 1.26 89.3 1.496 0.73 0.65 0 0 0.89
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 5 protein clashes
T22
T22
61 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_68
clean safety profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 5 protein contact clashes; moderate strain Δ 25.9, geometry warning, and strain ΔE = 25.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 448.4 · logP 1.68 · TPSA 52.0
39.0 0.65 1.0097 -1.0091 18 25.91 448.4 1.68 52.0 5.564 0.76 0.55 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 5 protein contact clashes; moderate strain Δ 25.9
T22
T22
62 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1546616194
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 4 protein clashes; high strain Δ 38.7, geometry warning, and strain ΔE = 38.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 287.2 · logP -0.05 · TPSA 136.4
43.8 0.48 3.9117 -1.6429 5 38.73 287.2 -0.05 136.4 3.382 0.70 0.44 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 4 protein clashes; high strain Δ 38.7
T22
T22
63 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49576315
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 4 protein clashes; high strain Δ 57.3, geometry warning, and strain ΔE = 57.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 379.4 · logP 1.70 · TPSA 143.3
41.9 0.30 4.9136 -1.3388 2 57.33 379.4 1.70 143.3 2.726 0.63 0.81 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; high strain Δ 57.3
T22
T22
64 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56857031
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 26.4, geometry warning, and strain ΔE = 26.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 304.4 · logP 2.82 · TPSA 88.1
40.5 0.64 2.4901 -1.5777 7 26.43 304.4 2.82 88.1 2.235 0.34 0.42 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 26.4
T22
T22
65 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45874785
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.6 · logP 2.47 · TPSA 61.9
42.1 0.47 2.8419 -1.1217 7 18.04 419.6 2.47 61.9 1.975 0.55 0.56 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 11 clashes; 1 protein clash
T22
T22
66 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45900933
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.5 · logP 2.21 · TPSA 52.6
41.7 0.45 3.1882 -1.2120 6 14.78 393.5 2.21 52.6 1.993 0.59 0.46 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash
T22
T22
67 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27745923
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 3.78 · TPSA 57.7
35.9 0.29 4.4842 -1.1088 16 11.98 394.5 3.78 57.7 1.859 0.62 0.69 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 3 protein clashes
T22
T22
68 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27521484
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 382.4 · logP 4.22 · TPSA 79.9
31.6 0.16 5.5556 -1.0693 10 12.27 382.4 4.22 79.9 2.099 0.40 0.61 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 4 protein clashes
T22
T22
69 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45956756
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 263.3 · logP 3.82 · TPSA 53.4
50.1 0.65 1.6652 -1.5328 11 10.68 263.3 3.82 53.4 2.238 0.73 0.71 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T22
T22
70 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC271
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 297.3 · logP 2.30 · TPSA 91.4
49.8 0.60 2.1446 -1.4285 10 14.78 297.3 2.30 91.4 2.229 0.70 0.75 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash
T22
T22
71 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45537946
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 0.95 · TPSA 106.3
49.8 0.51 3.4621 -1.5542 7 23.37 344.4 0.95 106.3 1.784 0.73 0.72 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.4
T22
T22
72 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56811592
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 20.7, geometry warning, and strain ΔE = 20.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 2.47 · TPSA 92.4
43.5 0.51 2.8200 -1.2495 8 20.72 375.5 2.47 92.4 2.554 0.62 0.47 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 20.7
T22
T22
73 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z96281652
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 373.4 · logP 1.88 · TPSA 90.0
45.2 0.52 2.2390 -1.1838 9 25.61 373.4 1.88 90.0 2.419 0.73 0.60 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 25.6
T22
T22
74 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57009636
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 315.3 · logP 1.60 · TPSA 88.0
43.4 0.38 4.1059 -1.3993 8 18.59 315.3 1.60 88.0 2.587 0.73 0.62 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T22
T22
75 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_84
native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 23.5, geometry warning, and strain ΔE = 23.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.4 · logP 2.71 · TPSA 101.6
41.8 0.59 1.8869 -1.0851 14 23.53 378.4 2.71 101.6 3.826 0.58 0.69 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 23.5
T22
T22
76 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19455379
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 1.88 · TPSA 124.3
43.5 0.44 3.2742 -1.3024 8 15.91 344.4 1.88 124.3 2.724 0.70 0.56 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
T22
T22
77 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44305068
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.8 · logP 3.74 · TPSA 102.4
42.5 0.54 2.4016 -1.1587 11 21.63 400.8 3.74 102.4 2.336 0.58 0.51 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 21.6
T22
T22
78 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2418739356
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.8 · logP 3.46 · TPSA 66.4
43.5 0.51 3.0197 -1.5280 8 13.61 311.8 3.46 66.4 2.005 0.65 0.36 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash
T22
T22
79 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0569
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.6, geometry warning, and strain ΔE = 20.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 324.3 · logP 0.23 · TPSA 141.2
42.8 0.50 3.0034 -1.3992 7 20.61 324.3 0.23 141.2 2.403 0.60 0.39 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.6
T22
T22
80 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z23213151
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 2.19 · TPSA 90.3
41.3 0.45 3.1419 -1.2439 11 16.58 355.4 2.19 90.3 3.225 0.62 0.66 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 2 protein clashes
T22
T22
81 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45537933
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 326.4 · logP 0.81 · TPSA 106.3
48.3 0.48 3.5922 -1.5400 7 22.81 326.4 0.81 106.3 1.714 0.73 0.64 0 0 0.85
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 22.8
T22
T22
82 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_316
Hydrophobic burial looks adequate: 31% exposed (9/29 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.6 · logP 3.87 · TPSA 45.9
40.7 0.52 2.4078 -1.0957 9 18.64 426.6 3.87 45.9 4.892 0.62 0.53 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 1 protein clash
T22
T22
83 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57176222
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 5 protein clashes; moderate strain Δ 25.1, geometry warning, and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 302.2 · logP 1.99 · TPSA 131.4
39.2 0.28 5.1522 -1.4452 6 25.15 302.2 1.99 131.4 2.545 0.63 0.57 0 0 0.43
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 5 protein clashes; moderate strain Δ 25.1
T22
T22
84 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57906432
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.8 · logP 3.60 · TPSA 102.4
40.5 0.39 3.6784 -1.2049 9 13.92 378.8 3.60 102.4 2.123 0.58 0.53 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T22
T22
85 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57906434
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 372.4 · logP 2.94 · TPSA 102.4
41.8 0.42 4.2802 -1.4686 10 13.31 372.4 2.94 102.4 2.206 0.58 0.66 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T22
T22
86 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27681463
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.8, geometry warning, and strain ΔE = 31.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 425.5 · logP 2.13 · TPSA 122.7
40.1 0.37 3.6179 -1.0818 5 31.85 425.5 2.13 122.7 2.678 0.52 0.59 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.8
T22
T22
87 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_182
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 20.3, geometry warning, and strain ΔE = 20.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 366.4 · logP 2.33 · TPSA 102.1
46.1 0.44 3.5038 -1.2640 7 20.27 366.4 2.33 102.1 2.517 0.58 0.84 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 20.3
T22
T22
88 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_97
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 411.5 · logP 3.53 · TPSA 94.5
38.1 0.32 4.6365 -1.2366 10 13.65 411.5 3.53 94.5 3.083 0.55 0.68 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
T22
T22
89 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2022_32
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 4 protein clashes; high strain Δ 70.8, geometry warning, and strain ΔE = 70.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 443.2 · logP -2.27 · TPSA 243.3
39.0 0.45 4.1725 -1.4993 5 70.77 443.2 -2.27 243.3 4.301 0.56 0.79 0 0 0.19
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 4 protein clashes; high strain Δ 70.8
T22
T22
90 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_339
60% of hydrophobic surface is solvent-exposed (6/10 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.4, geometry warning, and strain ΔE = 34.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 304.7 · logP -2.11 · TPSA 144.2
38.7 0.42 3.7636 -1.5316 6 34.43 304.7 -2.11 144.2 4.016 0.60 0.55 0 0 0.42
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.4
T22
T22
91 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_303
56% of hydrophobic surface appears solvent-exposed (15/27 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.6 · logP 3.42 · TPSA 29.4
37.1 0.51 2.2161 -1.0122 15 15.78 398.6 3.42 29.4 4.902 0.62 0.56 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T22
T22
92 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57392960
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.9 · logP 4.26 · TPSA 73.3
38.3 0.45 3.4768 -1.2819 10 15.90 419.9 4.26 73.3 2.733 0.40 0.61 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T22
T22
93 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z32377576
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 5 protein clashes; moderate strain Δ 20.4, geometry warning, and strain ΔE = 20.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.9 · logP 0.61 · TPSA 149.4
40.8 0.28 5.6257 -1.4671 8 20.45 417.9 0.61 149.4 2.006 0.56 0.78 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 5 protein clashes; moderate strain Δ 20.4
T22
T22
94 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55294982
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.3 · logP 4.81 · TPSA 78.5
36.8 0.37 3.7896 -1.1326 12 14.14 428.3 4.81 78.5 1.948 0.43 0.63 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T22
T22
95 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0404
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 4 protein clashes; high strain Δ 31.2, geometry warning, and strain ΔE = 31.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 298.3 · logP 0.82 · TPSA 120.8
40.3 0.30 5.2378 -1.6345 4 31.20 298.3 0.82 120.8 2.451 0.66 0.49 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 4 protein clashes; high strain Δ 31.2
T22
T22
96 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30932242
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 346.5 · logP 2.56 · TPSA 89.3
41.0 0.43 3.4317 -1.2808 12 14.35 346.5 2.56 89.3 1.768 0.62 0.58 0 0 0.89
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T22
T22
97 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45872631
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 2.07 · TPSA 52.6
41.4 0.54 2.6836 -1.3357 12 14.26 375.5 2.07 52.6 1.868 0.59 0.60 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 10 clashes; 1 protein clash
T22
T22
98 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TbNat_133
67% of hydrophobic surface is solvent-exposed (12/18 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.3 · logP 2.08 · TPSA 106.2
33.6 0.27 4.7268 -1.2377 12 17.41 344.3 2.08 106.2 4.172 0.73 0.44 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 4 protein clashes
T22
T22
99 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0837
reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 26.7, geometry warning, and strain ΔE = 26.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP -0.26 · TPSA 144.0
37.2 0.34 4.7186 -1.5924 6 26.68 281.3 -0.26 144.0 2.415 0.60 0.36 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 26.7
T22
T22
100 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_301
native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.6 · logP 3.60 · TPSA 42.5
37.0 0.58 1.5392 -0.9976 15 16.57 412.6 3.60 42.5 4.885 0.55 0.66 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 15 clashes; 5 protein contact clashes
T22
T22
101 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_54
clean safety profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 18 clashes; 2 protein clashes; high strain Δ 59.8, geometry warning, and strain ΔE = 59.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.6 · logP 1.94 · TPSA 58.4
24.7 0.28 3.9721 -1.1568 14 59.78 406.6 1.94 58.4 5.458 0.76 0.45 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 18 clashes; 2 protein clashes; high strain Δ 59.8
T22
T22
102 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z133716394
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 20.6, geometry warning, and strain ΔE = 20.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 374.9 · logP 1.81 · TPSA 97.5
48.1 0.48 3.9368 -1.6330 8 20.56 374.9 1.81 97.5 1.870 0.73 0.73 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 20.6
T22
T22
103 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44852102
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 22.6, geometry warning, and strain ΔE = 22.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.4 · logP 2.50 · TPSA 73.6
44.8 0.51 2.6883 -1.2497 11 22.62 321.4 2.50 73.6 2.441 0.62 0.77 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 22.6
T22
T22
104 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z286182030
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 32.4, geometry warning, and strain ΔE = 32.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 439.7 · logP 2.69 · TPSA 106.3
45.5 0.50 3.2653 -1.4800 7 32.40 439.7 2.69 106.3 2.129 0.62 0.72 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 32.4
T22
T22
105 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_14
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 29.9, geometry warning, and strain ΔE = 29.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 371.4 · logP 3.04 · TPSA 63.4
45.9 0.49 2.6838 -1.1624 7 29.90 371.4 3.04 63.4 2.222 0.62 0.72 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 29.9
T22
T22
106 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19352754
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.0, geometry warning, and strain ΔE = 26.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 381.4 · logP 1.83 · TPSA 100.6
43.7 0.49 2.7504 -1.1322 11 25.96 381.4 1.83 100.6 2.421 0.70 0.61 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.0
T22
T22
107 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z195195302
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 351.4 · logP 1.92 · TPSA 101.0
44.4 0.52 2.8331 -1.2933 12 21.61 351.4 1.92 101.0 1.964 0.70 0.63 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 21.6
T22
T22
108 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_40
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 2.47 · TPSA 104.5
43.1 0.55 2.7271 -1.2073 11 26.97 388.5 2.47 104.5 2.849 0.58 0.62 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 27.0
T22
T22
109 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_190
72% of hydrophobic surface is solvent-exposed (13/18 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.6, geometry warning, and strain ΔE = 24.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 382.4 · logP 3.17 · TPSA 61.5
41.7 0.64 1.4336 -1.1746 13 24.58 382.4 3.17 61.5 3.524 0.50 0.64 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.6
T22
T22
110 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z73762419
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.2, geometry warning, and strain ΔE = 25.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 353.4 · logP 1.68 · TPSA 89.3
42.2 0.43 3.2807 -1.1588 11 25.20 353.4 1.68 89.3 2.045 0.70 0.60 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.2
T22
T22
111 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z28905104
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 2.51 · TPSA 57.7
43.6 0.36 3.5296 -1.1275 7 16.99 388.5 2.51 57.7 2.068 0.65 0.69 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T22
T22
112 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z314612464
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 21.8, geometry warning, and strain ΔE = 21.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 314.4 · logP 3.04 · TPSA 68.3
42.7 0.54 2.6917 -1.3959 11 21.77 314.4 3.04 68.3 1.909 0.62 0.52 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 21.8
T22
T22
113 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0432
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 3 protein clashes; high strain Δ 37.1, geometry warning, and strain ΔE = 37.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.4 · logP 3.33 · TPSA 110.3
41.6 0.32 4.7519 -1.2603 6 37.11 398.4 3.33 110.3 2.030 0.58 0.79 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 3 protein clashes; high strain Δ 37.1
T22
T22
114 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_626
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.7, geometry warning, and strain ΔE = 22.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 343.5 · logP 1.71 · TPSA 110.9
41.3 0.39 4.0724 -1.4455 11 22.65 343.5 1.71 110.9 2.415 0.73 0.60 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.7
T22
T22
115 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_22
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 3.33 · TPSA 73.0
39.9 0.53 2.4174 -1.1963 15 19.71 354.4 3.33 73.0 2.288 0.62 0.56 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes
T22
T22
116 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_76
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 303.4 · logP 2.51 · TPSA 67.7
39.1 0.42 3.3708 -1.3162 9 16.26 303.4 2.51 67.7 2.507 0.62 0.41 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T22
T22
117 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC287
reasonable synthesis profile
Details
Why selected: Good docking score and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 22.4, geometry warning, and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 235.3 · logP -0.33 · TPSA 98.8
41.3 0.56 3.3999 -1.8555 11 22.41 235.3 -0.33 98.8 3.110 0.73 0.31 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 22.4
T22
T22
118 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29084466
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.5 · logP 2.27 · TPSA 109.6
40.2 0.42 3.3936 -1.1892 13 18.50 393.5 2.27 109.6 2.062 0.62 0.68 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T22
T22
119 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0564
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 323.3 · logP 0.35 · TPSA 148.0
41.4 0.49 3.5289 -1.5003 7 25.76 323.3 0.35 148.0 3.165 0.60 0.42 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.8
T22
T22
120 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49638306
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.4 · logP 3.86 · TPSA 107.7
39.1 0.47 2.9838 -1.1511 17 16.88 398.4 3.86 107.7 2.354 0.58 0.82 0 0 0.36
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T22
T22
121 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19129319
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.1, geometry warning, and strain ΔE = 31.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 399.5 · logP 2.21 · TPSA 90.2
37.9 0.38 4.1104 -1.0935 13 31.09 399.5 2.21 90.2 2.186 0.58 0.60 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.1
T22
T22
122 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC410
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 350.4 · logP 2.45 · TPSA 104.8
43.9 0.47 2.9638 -1.2406 8 16.95 350.4 2.45 104.8 3.351 0.58 0.73 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes
T22
T22
123 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31413736
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.8, geometry warning, and strain ΔE = 30.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.8 · logP 0.89 · TPSA 149.4
42.6 0.41 3.7355 -1.4208 7 30.83 389.8 0.89 149.4 1.905 0.63 0.70 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.8
T22
T22
124 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30932232
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 6 protein clashes; moderate strain Δ 22.5, geometry warning, and strain ΔE = 22.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.4 · logP 1.25 · TPSA 89.3
40.3 0.28 5.9101 -1.7324 8 22.50 310.4 1.25 89.3 1.892 0.73 0.53 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 6 protein clashes; moderate strain Δ 22.5
T22
T22
125 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_170
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 307.3 · logP 2.41 · TPSA 94.8
43.3 0.49 2.9508 -1.4399 8 19.35 307.3 2.41 94.8 2.210 0.58 0.61 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T22
T22
126 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_222
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 14 protein contact clashes; high strain Δ 43.6, geometry warning, and strain ΔE = 43.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.5 · logP 4.67 · TPSA 81.0
35.2 0.42 2.6318 -0.9810 6 43.57 432.5 4.67 81.0 2.713 0.36 0.56 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 14 protein contact clashes; high strain Δ 43.6
T22
T22
127 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55260483
100% of hydrophobic surface is solvent-exposed (17/17 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 41.2, geometry warning, and strain ΔE = 41.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.5 · logP 1.15 · TPSA 123.4
35.5 0.58 2.3059 -1.2572 17 41.24 400.5 1.15 123.4 4.009 0.63 0.50 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 41.2
T22
T22
128 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49596752
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.0, geometry warning, and strain ΔE = 20.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 456.4 · logP 3.17 · TPSA 88.1
35.3 0.31 4.3601 -1.1200 12 20.01 456.4 3.17 88.1 2.247 0.47 0.70 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.0
T22
T22
129 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0976
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes; high strain Δ 43.7, geometry warning, and strain ΔE = 43.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 2.45 · TPSA 117.9
37.3 0.24 5.2793 -1.2983 5 43.74 388.5 2.45 117.9 2.252 0.58 0.63 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; high strain Δ 43.7
T22
T22
130 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_32
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 3 protein clashes; moderate strain Δ 20.5, geometry warning, and strain ΔE = 20.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 465.6 · logP 3.11 · TPSA 87.7
32.6 0.20 4.8370 -0.9237 9 20.49 465.6 3.11 87.7 2.397 0.44 0.60 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 3 protein clashes; moderate strain Δ 20.5
T22
T22
131 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56174576
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 370.4 · logP 3.76 · TPSA 66.5
36.7 0.30 4.2285 -1.1666 9 15.55 370.4 3.76 66.5 2.124 0.62 0.41 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T22
T22
132 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_108
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 465.5 · logP 3.26 · TPSA 61.4
28.9 0.31 3.8042 -0.8822 16 15.41 465.5 3.26 61.4 3.403 0.36 0.66 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 2 protein clashes
T22
T22
133 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_66
78% of hydrophobic surface is solvent-exposed (21/27 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 5 protein contact clashes; moderate strain Δ 23.0, geometry warning, and strain ΔE = 23.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 487.5 · logP 4.02 · TPSA 50.8
28.6 0.61 1.2737 -0.9599 21 23.04 487.5 4.02 50.8 4.999 0.32 0.53 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 5 protein contact clashes; moderate strain Δ 23.0
T22
T22
134 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57300836
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.9 · logP 4.27 · TPSA 66.5
33.2 0.28 4.6230 -1.2211 9 14.47 386.9 4.27 66.5 2.119 0.43 0.45 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T22
T22
135 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK174
95% of hydrophobic surface is solvent-exposed (20/21 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 452.0 · logP 5.01 · TPSA 64.8
21.4 0.22 4.9962 -1.0466 20 15.08 452.0 5.01 64.8 4.194 0.36 0.55 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 3 protein clashes
T22
T22
136 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK178
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 383.5 · logP 1.19 · TPSA 96.2
44.0 0.53 2.3627 -1.1807 12 25.83 383.5 1.19 96.2 2.535 0.70 0.67 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 25.8
T22
T22
137 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z16382399
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 31.2, geometry warning, and strain ΔE = 31.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.5 · logP 1.94 · TPSA 98.1
42.9 0.42 3.3462 -1.0915 8 31.16 431.5 1.94 98.1 3.026 0.66 0.69 0 0 0.43
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 31.2
T22
T22
138 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_101
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.0, geometry warning, and strain ΔE = 26.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.5 · logP 2.27 · TPSA 89.7
41.1 0.38 4.0318 -1.2085 9 25.96 389.5 2.27 89.7 3.687 0.58 0.84 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.0
T22
T22
139 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49597668
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 23.6, geometry warning, and strain ΔE = 23.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 414.9 · logP 3.87 · TPSA 104.0
41.7 0.36 3.7226 -1.1064 7 23.57 414.9 3.87 104.0 2.415 0.55 0.75 0 0 0.36
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 23.6
T22
T22
140 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29466897
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 3 protein clashes; high strain Δ 42.8, geometry warning, and strain ΔE = 42.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 349.4 · logP 2.43 · TPSA 98.5
40.3 0.38 4.3128 -1.1992 8 42.84 349.4 2.43 98.5 2.295 0.58 0.59 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; high strain Δ 42.8
T22
T22
141 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3457
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes, geometry warning, and strain ΔE = 19.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 341.4 · logP -1.28 · TPSA 124.6
40.7 0.48 3.5993 -1.5090 13 19.25 341.4 -1.28 124.6 3.078 0.63 0.69 0 0 0.46
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
T22
T22
142 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_167
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 4 protein clashes; high strain Δ 45.7, geometry warning, and strain ΔE = 45.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 342.4 · logP 1.13 · TPSA 129.6
43.3 0.42 4.0549 -1.4931 8 45.66 342.4 1.13 129.6 2.479 0.70 0.82 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 4 protein clashes; high strain Δ 45.7
T22
T22
143 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC490
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 3.58 · TPSA 92.4
39.6 0.51 2.4596 -1.1771 14 17.13 394.5 3.58 92.4 3.774 0.58 0.73 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T22
T22
144 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z87656593
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 421.5 · logP 2.13 · TPSA 109.6
39.4 0.40 4.0948 -1.3078 13 17.80 421.5 2.13 109.6 2.563 0.58 0.77 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 4 protein clashes
T22
T22
145 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_185
85% of hydrophobic surface is solvent-exposed (11/13 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 44.6, geometry warning, and strain ΔE = 44.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 323.3 · logP 0.80 · TPSA 120.6
37.2 0.46 3.1645 -1.3803 11 44.59 323.3 0.80 120.6 3.454 0.70 0.49 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 44.6
T22
T22
146 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0547
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.4 · logP 0.40 · TPSA 153.1
41.5 0.46 3.3593 -1.4021 7 26.99 322.4 0.40 153.1 2.242 0.60 0.45 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 27.0
T22
T22
147 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_93
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.7, geometry warning, and strain ΔE = 20.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.5 · logP 3.72 · TPSA 93.2
36.6 0.37 3.8890 -1.0943 14 20.74 416.5 3.72 93.2 2.266 0.55 0.65 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.7
T22
T22
148 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56821783
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 0.14 · TPSA 77.4
39.7 0.55 3.2525 -1.5903 15 25.00 332.4 0.14 77.4 2.938 0.70 0.50 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 25.0
T22
T22
149 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z26825047
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 22.2, geometry warning, and strain ΔE = 22.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 463.0 · logP 3.75 · TPSA 92.3
37.0 0.43 2.8588 -1.0766 11 22.21 463.0 3.75 92.3 2.330 0.44 0.64 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 22.2
T22
T22
150 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC313
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 24.1, geometry warning, and strain ΔE = 24.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 455.6 · logP 3.78 · TPSA 118.4
36.7 0.31 4.4153 -1.0970 8 24.08 455.6 3.78 118.4 2.132 0.44 0.63 0 0 0.52
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 24.1
T22
T22
151 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31474376
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.5 · logP 3.76 · TPSA 66.5
40.4 0.50 2.6444 -1.1646 14 26.51 380.5 3.76 66.5 1.711 0.62 0.59 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.5
T22
T22
152 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z89541367
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.4 · logP 3.22 · TPSA 74.8
34.8 0.41 3.2745 -1.1112 14 19.57 361.4 3.22 74.8 2.697 0.62 0.38 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T22
T22
153 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56782307
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 43.9, geometry warning, and strain ΔE = 43.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 1.48 · TPSA 109.4
36.4 0.34 3.8564 -1.0373 9 43.92 410.5 1.48 109.4 2.915 0.70 0.45 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 43.9
T22
T22
154 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49576055
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 4 protein clashes; high strain Δ 58.8, geometry warning, and strain ΔE = 58.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 365.3 · logP 1.31 · TPSA 143.3
40.2 0.39 4.4347 -1.4337 7 58.79 365.3 1.31 143.3 2.709 0.63 0.78 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 4 protein clashes; high strain Δ 58.8
T22
T22
155 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_11
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.4 · logP 3.12 · TPSA 90.4
35.5 0.37 3.4191 -1.0440 15 13.95 389.4 3.12 90.4 2.839 0.58 0.64 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T22
T22
156 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_37
48% of hydrophobic surface appears solvent-exposed (11/23 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.9 · logP 3.65 · TPSA 33.9
37.6 0.42 3.0648 -1.1194 11 26.98 380.9 3.65 33.9 3.546 0.62 0.57 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 27.0
T22
T22
157 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_404
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.3, geometry warning, and strain ΔE = 24.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.3 · logP 1.17 · TPSA 79.5
33.8 0.49 2.9967 -1.3240 17 24.32 311.3 1.17 79.5 2.905 0.67 0.48 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.3
T22
T22
158 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45692840
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.5 · logP 3.54 · TPSA 49.4
36.8 0.49 3.1179 -1.4445 15 22.87 322.5 3.54 49.4 1.969 0.65 0.38 0 0 0.94
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.9
T22
T22
159 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30857952
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 4 protein clashes; moderate strain Δ 24.7, geometry warning, and strain ΔE = 24.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.4 · logP 1.24 · TPSA 98.5
39.6 0.38 4.2806 -1.4806 10 24.68 348.4 1.24 98.5 1.743 0.70 0.53 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; moderate strain Δ 24.7
T22
T22
160 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_34
73% of hydrophobic surface is solvent-exposed (8/11 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 4 protein clashes; high strain Δ 38.6, geometry warning, and strain ΔE = 38.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 313.3 · logP 0.51 · TPSA 136.4
39.0 0.43 4.3231 -1.6537 8 38.64 313.3 0.51 136.4 3.635 0.66 0.52 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 4 protein clashes; high strain Δ 38.6
T22
T22
161 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC325
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 5 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.4 · logP 0.65 · TPSA 86.0
39.8 0.28 5.3882 -1.5669 10 17.02 321.4 0.65 86.0 2.740 0.70 0.77 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 5 protein clashes
T22
T22
162 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_75
64% of hydrophobic surface is solvent-exposed (14/22 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.5 · logP 2.86 · TPSA 86.9
36.7 0.44 2.8078 -1.1043 14 15.71 369.5 2.86 86.9 3.481 0.58 0.61 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T22
T22
163 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29007297
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.0, geometry warning, and strain ΔE = 28.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 441.9 · logP 1.57 · TPSA 104.8
36.8 0.32 4.4388 -1.1188 11 27.99 441.9 1.57 104.8 2.131 0.63 0.70 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.0
T22
T22
164 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1541815088
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 307.4 · logP 2.82 · TPSA 75.6
38.6 0.47 3.1300 -1.4577 9 25.62 307.4 2.82 75.6 1.981 0.62 0.30 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 25.6
T22
T22
165 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK194
45% of hydrophobic surface appears solvent-exposed (9/20 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 17 clashes; 3 protein clashes; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.0 · logP 4.48 · TPSA 63.2
31.4 0.27 4.5946 -1.1130 9 25.03 428.0 4.48 63.2 3.846 0.43 0.50 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 3 protein clashes; moderate strain Δ 25.0
T22
T22
166 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1030
90% of hydrophobic surface is solvent-exposed (9/10 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 5 clashes; 4 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 270.2 · logP -2.77 · TPSA 144.2
33.4 0.28 5.8878 -1.7587 9 25.72 270.2 -2.77 144.2 4.022 0.60 0.46 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 4 protein clashes; moderate strain Δ 25.7
T22
T22
167 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_198
57% of hydrophobic surface appears solvent-exposed (16/28 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash; high strain Δ 31.9, geometry warning, and strain ΔE = 31.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 434.6 · logP 1.84 · TPSA 35.2
28.7 0.30 3.6898 -0.9583 16 31.86 434.6 1.84 35.2 5.661 0.73 0.55 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 1 protein clash; high strain Δ 31.9
T22
T22
168 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56821211
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes; high strain Δ 35.9, geometry warning, and strain ΔE = 35.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 356.4 · logP 2.23 · TPSA 99.7
41.5 0.41 3.7830 -1.3351 9 35.93 356.4 2.23 99.7 2.268 0.58 0.82 0 0 0.28
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; high strain Δ 35.9
T22
T22
169 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK212
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 28.4, geometry warning, and strain ΔE = 28.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.80 · TPSA 100.6
39.9 0.41 2.7554 -1.0057 11 28.42 409.5 3.80 100.6 3.610 0.66 0.80 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 28.4
T22
T22
170 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57100312
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 27.8, geometry warning, and strain ΔE = 27.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 320.4 · logP 2.52 · TPSA 90.4
40.4 0.52 2.7109 -1.3401 12 27.79 320.4 2.52 90.4 2.508 0.58 0.60 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 27.8
T22
T22
171 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1521553597
39% of hydrophobic surface appears solvent-exposed (9/23 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.9, geometry warning, and strain ΔE = 26.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.5 · logP 3.08 · TPSA 84.4
37.9 0.37 3.8126 -1.1061 9 26.89 426.5 3.08 84.4 3.318 0.55 0.63 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.9
T22
T22
172 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z104500108
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 25.1, geometry warning, and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 368.4 · logP 3.85 · TPSA 96.2
40.3 0.44 2.7887 -1.1557 14 25.07 368.4 3.85 96.2 2.613 0.70 0.79 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 25.1
T22
T22
173 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z33598736
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 35.1, geometry warning, and strain ΔE = 35.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.5 · logP 3.47 · TPSA 75.3
40.1 0.40 3.7799 -1.1926 9 35.13 386.5 3.47 75.3 1.928 0.58 0.63 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 35.1
T22
T22
174 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_26
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.9, geometry warning, and strain ΔE = 25.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 403.5 · logP 3.62 · TPSA 69.5
37.2 0.35 3.9391 -1.2573 11 25.90 403.5 3.62 69.5 3.452 0.62 0.75 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.9
T22
T22
175 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49558975
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 2.25 · TPSA 120.0
39.4 0.40 3.9477 -1.3511 10 25.84 354.4 2.25 120.0 2.513 0.55 0.73 0 0 0.33
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 25.8
T22
T22
176 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_21
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 48.8, geometry warning, and strain ΔE = 48.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.5 · logP 1.95 · TPSA 143.7
37.8 0.41 3.6485 -1.2829 7 48.85 406.5 1.95 143.7 3.219 0.56 0.64 0 0 0.41
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 48.8
T22
T22
177 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z17094078
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; high strain Δ 30.5, geometry warning, and strain ΔE = 30.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 401.4 · logP 2.23 · TPSA 131.3
37.6 0.28 4.1366 -1.1343 8 30.51 401.4 2.23 131.3 2.158 0.52 0.84 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; high strain Δ 30.5
T22
T22
178 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_128
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.2, geometry warning, and strain ΔE = 26.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 464.6 · logP 3.16 · TPSA 110.1
36.4 0.39 3.0387 -0.9311 12 26.23 464.6 3.16 110.1 2.421 0.44 0.74 0 0 0.43
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.2
T22
T22
179 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_42
71% of hydrophobic surface is solvent-exposed (15/21 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 49.1, geometry warning, and strain ΔE = 49.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 447.6 · logP 1.71 · TPSA 66.7
36.3 0.49 2.9871 -1.1890 15 49.07 447.6 1.71 66.7 3.764 0.70 0.64 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 49.1
T22
T22
180 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_107
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 29.6, geometry warning, and strain ΔE = 29.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 487.4 · logP 2.06 · TPSA 130.3
34.9 0.27 4.5378 -1.0496 12 29.58 487.4 2.06 130.3 2.636 0.52 0.81 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 29.6
T22
T22
181 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z334929348
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 29.1, geometry warning, and strain ΔE = 29.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.2 · logP 2.96 · TPSA 92.4
36.9 0.41 4.5122 -1.6923 12 29.09 347.2 2.96 92.4 2.063 0.62 0.52 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 29.1
T22
T22
182 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0779
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 2 protein clashes; high strain Δ 75.4, geometry warning, and strain ΔE = 75.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 341.3 · logP -0.32 · TPSA 130.5
34.4 0.44 3.5134 -1.3437 12 75.44 341.3 -0.32 130.5 2.767 0.70 0.54 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; high strain Δ 75.4
T22
T22
183 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z166606608
79% of hydrophobic surface is solvent-exposed (15/19 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.3 · logP 2.14 · TPSA 84.6
33.9 0.48 2.6661 -1.1670 15 25.75 352.3 2.14 84.6 3.259 0.58 0.39 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.8
T22
T22
184 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z71577027
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 27.1, geometry warning, and strain ΔE = 27.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.4 · logP 2.84 · TPSA 108.4
37.1 0.34 4.1102 -1.1569 13 27.05 369.4 2.84 108.4 1.882 0.58 0.68 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 27.1
T22
T22
185 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_29
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 437.6 · logP 4.30 · TPSA 110.9
35.6 0.33 4.1320 -1.2022 8 26.47 437.6 4.30 110.9 2.434 0.36 0.76 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 26.5
T22
T22
186 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0833
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; high strain Δ 40.6, geometry warning, and strain ΔE = 40.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.3 · logP -0.47 · TPSA 161.2
38.6 0.46 3.6267 -1.3962 11 40.61 340.3 -0.47 161.2 2.370 0.60 0.56 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; high strain Δ 40.6
T22
T22
187 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0433
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 3 protein clashes; high strain Δ 39.8, geometry warning, and strain ΔE = 39.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.5 · logP 3.06 · TPSA 113.5
37.7 0.26 5.1245 -1.1903 7 39.82 412.5 3.06 113.5 2.582 0.55 0.79 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 3 protein clashes; high strain Δ 39.8
T22
T22
188 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z68563450
Hydrophobic burial looks adequate: 33% exposed (8/24 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 45.9, geometry warning, and strain ΔE = 45.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.6 · logP 0.89 · TPSA 75.5
33.4 0.23 4.2287 -0.9814 8 45.90 428.6 0.89 75.5 3.499 0.66 0.64 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 45.9
T22
T22
189 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30004986
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 3 protein clashes; high strain Δ 31.2, geometry warning, and strain ΔE = 31.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 462.3 · logP 3.91 · TPSA 97.4
34.2 0.28 4.7900 -1.2452 8 31.18 462.3 3.91 97.4 2.024 0.44 0.61 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 3 protein clashes; high strain Δ 31.2
T22
T22
190 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z79567126
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 27.9, geometry warning, and strain ΔE = 27.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 459.6 · logP 2.49 · TPSA 118.3
33.9 0.21 4.8260 -0.9761 10 27.95 459.6 2.49 118.3 2.376 0.55 0.63 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 27.9
T22
T22
191 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK169
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 27.9, geometry warning, and strain ΔE = 27.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.5 · logP 1.25 · TPSA 112.2
39.3 0.33 4.2135 -1.2068 11 27.94 412.5 1.25 112.2 2.800 0.66 0.79 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 27.9
T22
T22
192 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30621155
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 4 protein clashes; high strain Δ 34.4, geometry warning, and strain ΔE = 34.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.4 · logP 1.43 · TPSA 99.5
36.2 0.24 4.9409 -1.2103 11 34.41 380.4 1.43 99.5 2.295 0.70 0.73 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; high strain Δ 34.4
T22
T22
193 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1501480428
61% of hydrophobic surface is solvent-exposed (14/23 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 22.5, geometry warning, and strain ΔE = 22.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 411.5 · logP 2.17 · TPSA 65.4
34.2 0.34 3.8164 -1.0416 14 22.48 411.5 2.17 65.4 3.720 0.62 0.62 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 22.5
T22
T22
194 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56835260
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.4, geometry warning, and strain ΔE = 27.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 359.5 · logP 3.97 · TPSA 55.4
30.1 0.43 3.3974 -1.3177 19 27.43 359.5 3.97 55.4 2.845 0.65 0.38 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.4
T22
T22
195 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0977
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes; high strain Δ 35.3, geometry warning, and strain ΔE = 35.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.4 · logP 1.66 · TPSA 117.9
35.2 0.33 4.5692 -1.4003 12 35.33 340.4 1.66 117.9 2.431 0.70 0.48 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; high strain Δ 35.3
T22
T22
196 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z24541677
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 3 clashes; 2 protein clashes; high strain Δ 36.0, geometry warning, and strain ΔE = 36.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 385.4 · logP 2.35 · TPSA 102.1
39.4 0.48 2.9115 -1.1910 12 36.01 385.4 2.35 102.1 2.197 0.58 0.61 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes; high strain Δ 36.0
T22
T22
197 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18704485
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 379.4 · logP 3.88 · TPSA 88.6
40.5 0.49 2.0237 -1.0753 12 27.03 379.4 3.88 88.6 2.389 0.58 0.73 0 0 0.37
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 27.0
T22
T22
198 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49724748
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 4 protein clashes; high strain Δ 32.9, geometry warning, and strain ΔE = 32.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 425.3 · logP 3.43 · TPSA 102.1
39.4 0.34 4.7740 -1.4217 9 32.87 425.3 3.43 102.1 2.662 0.58 0.77 0 0 0.25
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; high strain Δ 32.9
T22
T22
199 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2417557127
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 26.3, geometry warning, and strain ΔE = 26.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.9 · logP 4.27 · TPSA 92.5
34.5 0.37 3.4594 -1.0568 11 26.26 422.9 4.27 92.5 2.493 0.36 0.72 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 26.3
T22
T22
200 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30488659
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 30.4, geometry warning, and strain ΔE = 30.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 441.0 · logP 3.55 · TPSA 75.7
37.5 0.36 3.4798 -1.0821 11 30.43 441.0 3.55 75.7 2.294 0.58 0.70 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 30.4
Score composition ▼ show
Docking 28% · final rank, interaction-normalized score, raw docking score
Burial 18% · absolute exposed hydrophobic atom count (lower is better)
Strain 14% · strain delta, intra score, geometry sanity
Safety / ADMET 18% · ADMET score with hERG/AMES/DILI/bioaccumulation penalties — Pareto objective
Ecotoxicology 9% · fish/daphnia/algae LC50 classes + bioaccumulation + persistence — Pareto objective
Synthesis 10% · SA score when available, otherwise Fsp3 proxy
Native similarity 12% · contact and H-bond recall when a native reference exists
Diversity shortlist 0% · cached shortlist already includes the novelty-aware selection step

How ranking works: Pareto fronts are built from six default objectives — docking score, ligand efficiency, burial depth, strain energy, ADMET safety, and ecotoxicology (fish/daphnia/algae LC₅₀ + bioaccumulation + persistence). Front 1 contains non-dominated ligands: no other ligand beats them across all six objectives simultaneously. Inside each front, ligands are ordered by a compromise score with explicit penalties for PAINS, reactivity, toxicity alerts, geometry warnings, excluded poses, and artifact annotations. The top 200 are returned using a diversity-aware selection step.

Methodology ▼ show
1. Candidate definition. For each target we keep one best pose per ligand, so the shortlist is not inflated by many similar poses of the same compound.
2. Objective set. Each ligand is evaluated across docking quality, absolute nonpolar solvent exposure (`n_exposed`), conformational strain, native-like interaction similarity when a native reference exists, safety and ecotoxicology, synthesizability, and general developability indicators such as QED.
2a. SASA / burial source. `SASA: done` = cached FreeSASA metrics. `queued/running` = background worker scheduled. `failed` = worker failed. `missing` = no SASA cached yet.
3. Liability penalties. PAINS motifs, reactive groups, toxicity alerts, artifact annotations, geometry warnings, and excluded-pose flags reduce the compromise score and are shown explicitly.
4. Pareto ranking. Front 1 = non-dominated ligands (no other ligand is better in all objectives simultaneously). Lower front number = more balanced profile.
5. Missing SASA handling. Missing SASA lowers `Data completeness` to `Provisional` but does not automatically reject a ligand. Binding and geometry axes stay independent.
6. Compromise score. `100 × clamp(weighted positive − liability penalty − missing-data penalty)`. Weights: docking 28%, burial 18%, strain 14%, safety/ecotox 18%, synthesis 10%, native similarity 12% (when reference exists).
7. Component details. Docking = `final_rank_score` 55% + `score_inter_norm` 30% + raw `score` 15%. Strain = `strain_delta` 55% + `score_intra_norm` 30% + geometry sanity 15%.
8. Final shortlist. Top 50 per target taken front-by-front with diversity-aware selection — near-duplicate analogs do not dominate.
How to read the table. `Pareto` = non-dominated layer, `Compromise` = within-front ordering score, `n_exposed` = burial proxy (lower is better), `Strain dE` = conformational stress, colored dots = quick green/orange/red cue.
How to use selections. Mark compounds row-by-row, save to `Current`/`Temp`/`A/B/C` sets, export to SDF/XLSX/CSV, or send to downstream analysis pages.