L. donovani rab5a · T22
L. donovani
Protein: Rab5a GTPase
Targets
1
each capped at 50 ligands
Best-pose candidates
533
one best pose per ligand per target
Synth metric
SA score
direct SA metric
Absolute burial proxy
n_exposed
absolute exposed hydrophobic atoms, not fraction
Pareto front 1
28
non-dominated ligands across all selected targets
Burial source
FreeSASA 200
Proxy 0 · Missing 0
Metrics coverage
Done 200
Pending 0 · Failed 0 · Missing 0
Diversity shortlist
Novelty 0.45
High novelty 200 · Close analogs 0
New vs legacy top 50
Added 2 · Dropped 2
Stayed 198 of 200 legacy picks
T22
Native
Front 1: 28
200 / 533 shortlisted
Best: Z19547115 · score 56.3
Pareto layers observed: 10
Metrics: done 200 · pending 0 · failed 0 · missing 0
Diversity: novelty 0.45 · close analogs 0
New vs legacy: added 2 · dropped 2 · stayed 198/200
Added: Z2417557127, Z30488659
·
Dropped: MK220, MK218
| Target | 2D | Rank | Pareto | Assessment | Ligand | Compromise | Docking | Final rank | Inter norm | n_exposed | Strain dE | MW | cLogP | TPSA | SA score | Safety | Native sim | PAINS | Reactive | QED | SASA | Flags | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T22 T22 |
|
1 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z19547115
native-like contacts, clean safety profile, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 373.5 · logP 1.67 · TPSA 71.3
|
56.3 | 0.69 | 1.1692 | -1.2022 | 8 | 13.37 | 373.5 | 1.67 | 71.3 | 2.132 | 0.76 | 0.77 | 0 | 0 | 0.76 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 5 protein contact clashes
|
|
| T22 T22 |
|
2 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC323
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 292.4 · logP 0.04 · TPSA 89.7
|
55.4 | 0.64 | 3.1444 | -1.9351 | 2 | 13.83 | 292.4 | 0.04 | 89.7 | 2.951 | 0.70 | 0.68 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
|
|
| T22 T22 |
|
3 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1501485351
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.5, geometry warning, and strain ΔE = 23.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 365.8 · logP 2.66 · TPSA 96.0
|
55.2 | 0.68 | 1.7331 | -1.4312 | 2 | 23.47 | 365.8 | 2.66 | 96.0 | 3.153 | 0.62 | 0.73 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.5
|
|
| T22 T22 |
|
4 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z29149152
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 0.94 · TPSA 86.4
|
54.2 | 0.61 | 1.7970 | -1.2303 | 6 | 13.84 | 354.4 | 0.94 | 86.4 | 2.217 | 0.73 | 0.77 | 0 | 0 | 0.89 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash
|
|
| T22 T22 |
|
5 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z55696460
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 316.3 · logP 1.85 · TPSA 125.1
|
52.8 | 0.51 | 2.6730 | -1.3796 | 1 | 22.92 | 316.3 | 1.85 | 125.1 | 1.865 | 0.70 | 0.69 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 22.9
|
|
| T22 T22 |
|
6 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56841578
native-like contacts, clean safety profile, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.5 · logP 1.86 · TPSA 55.4
|
50.6 | 0.54 | 3.0608 | -1.6011 | 6 | 18.32 | 331.5 | 1.86 | 55.4 | 2.910 | 0.76 | 0.71 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 3 protein clashes
|
|
| T22 T22 |
|
7 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49615771
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 256.3 · logP 2.44 · TPSA 85.4
|
50.8 | 0.67 | 2.1250 | -1.6479 | 8 | 9.54 | 256.3 | 2.44 | 85.4 | 2.378 | 0.73 | 0.42 | 0 | 0 | 0.45 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash
|
|
| T22 T22 |
|
8 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_181
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 367.4 · logP 1.58 · TPSA 128.2
|
52.2 | 0.43 | 3.6943 | -1.3215 | 0 | 25.57 | 367.4 | 1.58 | 128.2 | 2.538 | 0.66 | 0.86 | 0 | 0 | 0.56 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.6
|
|
| T22 T22 |
|
9 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC408
native-like contacts
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 9 protein contact clashes, geometry warning, and strain ΔE = 19.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.4 · logP 2.25 · TPSA 104.5
|
50.1 | 0.69 | 1.2690 | -1.2066 | 9 | 19.11 | 361.4 | 2.25 | 104.5 | 3.275 | 0.58 | 0.72 | 0 | 0 | 0.49 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 9 protein contact clashes
|
|
| T22 T22 |
|
10 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z115639124
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 290.4 · logP 3.10 · TPSA 59.1
|
50.1 | 0.52 | 3.1763 | -1.5911 | 4 | 17.09 | 290.4 | 3.10 | 59.1 | 2.032 | 0.73 | 0.52 | 0 | 0 | 0.81 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
|
|
| T22 T22 |
|
11 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0254
reasonable synthesis profile
DetailsWhy selected: Good docking score and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 27.4, geometry warning, and strain ΔE = 27.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.1 · logP 0.41 · TPSA 98.5
|
49.7 | 0.70 | 3.0953 | -2.2858 | 7 | 27.41 | 278.1 | 0.41 | 98.5 | 2.312 | 0.73 | 0.36 | 0 | 0 | 0.60 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 27.4
|
|
| T22 T22 |
|
12 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_39
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; high strain Δ 32.3, geometry warning, and strain ΔE = 32.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 3.04 · TPSA 46.1
|
49.4 | 0.57 | 2.1158 | -1.3198 | 1 | 32.27 | 332.4 | 3.04 | 46.1 | 3.155 | 0.62 | 0.61 | 0 | 0 | 0.77 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash; high strain Δ 32.3
|
|
| T22 T22 |
|
13 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z18754651
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 323.4 · logP 3.18 · TPSA 54.5
|
49.0 | 0.56 | 2.5251 | -1.3751 | 2 | 19.52 | 323.4 | 3.18 | 54.5 | 2.092 | 0.62 | 0.36 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T22 T22 |
|
14 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z25103234
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.4 · logP 2.59 · TPSA 61.3
|
49.1 | 0.43 | 3.8016 | -1.5005 | 5 | 6.70 | 308.4 | 2.59 | 61.3 | 2.251 | 0.76 | 0.55 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
|
|
| T22 T22 |
|
15 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49547294
strong docking, reasonable synthesis profile
DetailsWhy selected: Strong docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 12 protein contact clashes; moderate strain Δ 28.3, geometry warning, and strain ΔE = 28.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 257.2 · logP 1.26 · TPSA 94.8
|
48.9 | 0.77 | 1.3212 | -1.6128 | 13 | 28.34 | 257.2 | 1.26 | 94.8 | 2.196 | 0.73 | 0.44 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 12 protein contact clashes; moderate strain Δ 28.3
|
|
| T22 T22 |
|
16 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC324
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 305.4 · logP 0.95 · TPSA 76.8
|
53.1 | 0.71 | 2.2654 | -1.8252 | 9 | 11.67 | 305.4 | 0.95 | 76.8 | 2.783 | 0.70 | 0.73 | 0 | 0 | 0.78 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
|
|
| T22 T22 |
|
17 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z241739672
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.9 · logP 3.05 · TPSA 66.5
|
47.4 | 0.48 | 3.1855 | -1.2975 | 7 | 13.43 | 378.9 | 3.05 | 66.5 | 1.834 | 0.65 | 0.60 | 0 | 0 | 0.87 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
|
|
| T22 T22 |
|
18 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56832742
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 70.7, geometry warning, and strain ΔE = 70.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.5 · logP 3.67 · TPSA 124.9
|
47.1 | 0.55 | 2.3607 | -1.2469 | 0 | 70.70 | 395.5 | 3.67 | 124.9 | 3.373 | 0.58 | 0.78 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 70.7
|
|
| T22 T22 |
|
19 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z116369884
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 5 clashes; 5 protein clashes, geometry warning, and strain ΔE = 18.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 215.2 · logP -1.06 · TPSA 115.3
|
48.5 | 0.60 | 4.0086 | -2.2910 | 7 | 18.53 | 215.2 | -1.06 | 115.3 | 1.773 | 0.67 | 0.57 | 0 | 0 | 0.33 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 5 clashes; 5 protein clashes
|
|
| T22 T22 |
|
20 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z27682886
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.3 · logP 1.65 · TPSA 89.3
|
48.9 | 0.45 | 3.7065 | -1.4640 | 7 | 12.07 | 308.3 | 1.65 | 89.3 | 1.626 | 0.73 | 0.67 | 0 | 0 | 0.90 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
|
|
| T22 T22 |
|
21 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z124328460
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 20.4, geometry warning, and strain ΔE = 20.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 2.47 · TPSA 101.3
|
49.6 | 0.42 | 3.7132 | -1.3584 | 1 | 20.40 | 331.4 | 2.47 | 101.3 | 1.884 | 0.62 | 0.70 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 20.4
|
|
| T22 T22 |
|
22 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_ACDS_29
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 326.4 · logP 2.77 · TPSA 106.8
|
44.0 | 0.57 | 2.0970 | -1.2124 | 13 | 9.10 | 326.4 | 2.77 | 106.8 | 3.078 | 0.58 | 0.69 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash
|
|
| T22 T22 |
|
23 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC89
native-like contacts
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash and strain ΔE = 20.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 429.6 · logP 3.56 · TPSA 91.4
|
43.9 | 0.56 | 2.1162 | -1.0329 | 23 | 19.97 | 429.6 | 3.56 | 91.4 | 4.540 | 0.70 | 0.72 | 0 | 0 | 0.49 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
geometry warning; 6 clashes; 1 protein clash
|
|
| T22 T22 |
|
24 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0565
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 28.8, geometry warning, and strain ΔE = 28.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP 0.15 · TPSA 144.2
|
45.1 | 0.54 | 3.3258 | -1.6780 | 0 | 28.82 | 281.3 | 0.15 | 144.2 | 2.469 | 0.53 | 0.39 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 28.8
|
|
| T22 T22 |
|
25 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z28346745
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 24.9, geometry warning, and strain ΔE = 24.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.5 · logP 4.56 · TPSA 88.8
|
44.0 | 0.61 | 2.0852 | -1.0775 | 10 | 24.87 | 416.5 | 4.56 | 88.8 | 2.447 | 0.36 | 0.65 | 0 | 0 | 0.47 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 24.9
|
|
| T22 T22 |
|
26 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45875055
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 433.6 · logP 1.84 · TPSA 71.1
|
44.6 | 0.45 | 3.1230 | -1.1165 | 6 | 15.12 | 433.6 | 1.84 | 71.1 | 2.193 | 0.67 | 0.58 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T22 T22 |
|
27 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_Leish_110
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.4 · logP 3.82 · TPSA 110.0
|
41.4 | 0.37 | 4.3986 | -1.1721 | 11 | 17.53 | 395.4 | 3.82 | 110.0 | 2.508 | 0.58 | 0.70 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
|
|
| T22 T22 |
|
28 | 1 Front 1 (non-dominated) |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57300837
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.9 · logP 4.27 · TPSA 66.5
|
40.5 | 0.36 | 3.8782 | -1.2091 | 3 | 13.42 | 386.9 | 4.27 | 66.5 | 2.166 | 0.43 | 0.44 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash
|
|
| T22 T22 |
|
29 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_35
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes; high strain Δ 38.0, geometry warning, and strain ΔE = 38.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 301.2 · logP 0.51 · TPSA 136.4
|
48.9 | 0.56 | 3.0373 | -1.6924 | 4 | 38.03 | 301.2 | 0.51 | 136.4 | 3.504 | 0.66 | 0.80 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; high strain Δ 38.0
|
|
| T22 T22 |
|
30 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TC1_169
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.3 · logP 2.70 · TPSA 74.6
|
51.6 | 0.66 | 1.3414 | -1.3810 | 8 | 17.87 | 291.3 | 2.70 | 74.6 | 2.040 | 0.73 | 0.65 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash
|
|
| T22 T22 |
|
31 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK175
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; high strain Δ 32.2, geometry warning, and strain ΔE = 32.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 370.5 · logP 0.08 · TPSA 112.2
|
48.8 | 0.43 | 3.8087 | -1.4014 | 4 | 32.17 | 370.5 | 0.08 | 112.2 | 2.823 | 0.73 | 0.81 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; high strain Δ 32.2
|
|
| T22 T22 |
|
32 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC345
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 3 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 222.2 · logP -0.19 · TPSA 107.0
|
47.8 | 0.68 | 2.9555 | -2.1134 | 10 | 12.45 | 222.2 | -0.19 | 107.0 | 3.167 | 0.73 | 0.43 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 3 clashes; 3 protein clashes
|
|
| T22 T22 |
|
33 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
CKP-35
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 240.3 · logP 2.50 · TPSA 58.3
|
46.7 | 0.55 | 3.2508 | -1.7641 | 8 | 13.29 | 240.3 | 2.50 | 58.3 | 1.956 | 0.73 | 0.40 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
|
|
| T22 T22 |
|
34 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1053
100% of hydrophobic surface is solvent-exposed (10/10 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Good docking score and good contact coverage.
Main concern: geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 23.2, geometry warning, and strain ΔE = 23.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 286.7 · logP -1.07 · TPSA 113.0
|
45.9 | 0.68 | 2.2098 | -1.6805 | 10 | 23.21 | 286.7 | -1.07 | 113.0 | 3.901 | 0.73 | 0.35 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 23.2
|
|
| T22 T22 |
|
35 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30858102
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.9 · logP 3.17 · TPSA 89.3
|
48.7 | 0.55 | 3.4329 | -1.5933 | 8 | 14.40 | 394.9 | 3.17 | 89.3 | 2.018 | 0.58 | 0.79 | 0 | 0 | 0.70 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
|
|
| T22 T22 |
|
36 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_174
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 28.9, geometry warning, and strain ΔE = 28.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.4 · logP 3.90 · TPSA 74.8
|
46.5 | 0.55 | 1.8145 | -1.2074 | 5 | 28.87 | 347.4 | 3.90 | 74.8 | 1.967 | 0.62 | 0.55 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 28.9
|
|
| T22 T22 |
|
37 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30857987
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.8 · logP 1.89 · TPSA 89.3
|
50.4 | 0.54 | 3.0587 | -1.4892 | 9 | 13.79 | 352.8 | 1.89 | 89.3 | 1.746 | 0.70 | 0.78 | 0 | 0 | 0.83 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
|
|
| T22 T22 |
|
38 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30932461
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 358.4 · logP 1.37 · TPSA 119.5
|
48.0 | 0.39 | 4.6972 | -1.4959 | 7 | 15.78 | 358.4 | 1.37 | 119.5 | 1.955 | 0.70 | 0.83 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 4 protein clashes
|
|
| T22 T22 |
|
39 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z29673175
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; high strain Δ 36.1, geometry warning, and strain ΔE = 36.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 2.93 · TPSA 97.8
|
46.3 | 0.48 | 4.1273 | -1.4900 | 5 | 36.07 | 331.4 | 2.93 | 97.8 | 2.691 | 0.58 | 0.65 | 0 | 0 | 0.45 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; high strain Δ 36.1
|
|
| T22 T22 |
|
40 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49565795
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 3.37 · TPSA 61.8
|
45.7 | 0.55 | 2.2198 | -1.1333 | 10 | 12.65 | 355.4 | 3.37 | 61.8 | 1.897 | 0.62 | 0.55 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T22 T22 |
|
41 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z118508076
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 31.8, geometry warning, and strain ΔE = 31.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 4.35 · TPSA 67.5
|
45.8 | 0.69 | 1.9204 | -1.3701 | 10 | 31.77 | 355.4 | 4.35 | 67.5 | 2.597 | 0.43 | 0.63 | 0 | 0 | 0.44 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 31.8
|
|
| T22 T22 |
|
42 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z443419884
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 483.0 · logP 3.99 · TPSA 84.4
|
45.4 | 0.54 | 2.1081 | -1.0510 | 5 | 25.57 | 483.0 | 3.99 | 84.4 | 2.682 | 0.44 | 0.67 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.6
|
|
| T22 T22 |
|
43 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56261632
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.3 · logP 3.01 · TPSA 101.3
|
49.5 | 0.55 | 3.1764 | -1.5026 | 8 | 9.84 | 388.3 | 3.01 | 101.3 | 1.855 | 0.62 | 0.73 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
|
|
| T22 T22 |
|
44 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z53223394
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 312.4 · logP 0.32 · TPSA 118.0
|
47.9 | 0.52 | 3.1797 | -1.5344 | 7 | 17.86 | 312.4 | 0.32 | 118.0 | 2.865 | 0.73 | 0.60 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
|
|
| T22 T22 |
|
45 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z44089721
68% of hydrophobic surface is solvent-exposed (13/19 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.4 · logP 2.08 · TPSA 37.6
|
44.6 | 0.66 | 1.6931 | -1.4476 | 13 | 8.99 | 291.4 | 2.08 | 37.6 | 3.756 | 0.73 | 0.41 | 0 | 0 | 0.76 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T22 T22 |
|
46 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49605089
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.2, geometry warning, and strain ΔE = 24.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.5 · logP 1.14 · TPSA 132.2
|
45.1 | 0.46 | 3.3000 | -1.2095 | 6 | 24.22 | 418.5 | 1.14 | 132.2 | 2.531 | 0.63 | 0.62 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.2
|
|
| T22 T22 |
|
47 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TC1_88
clean safety profile, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 3.59 · TPSA 49.2
|
44.0 | 0.51 | 2.7001 | -1.3543 | 10 | 22.94 | 331.4 | 3.59 | 49.2 | 2.548 | 0.76 | 0.50 | 0 | 0 | 0.87 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 22.9
|
|
| T22 T22 |
|
48 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0915
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 282.3 · logP -0.16 · TPSA 98.2
|
43.6 | 0.46 | 3.8953 | -1.6195 | 11 | 9.66 | 282.3 | -0.16 | 98.2 | 2.377 | 0.73 | 0.51 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
|
|
| T22 T22 |
|
49 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z29406212
clean safety profile, reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 346.4 · logP 1.83 · TPSA 70.8
|
45.7 | 0.55 | 2.7470 | -1.4214 | 12 | 13.32 | 346.4 | 1.83 | 70.8 | 2.101 | 0.76 | 0.52 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T22 T22 |
|
50 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30564216
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; high strain Δ 31.9, geometry warning, and strain ΔE = 31.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.8 · logP 2.77 · TPSA 66.5
|
46.1 | 0.48 | 3.2271 | -1.4427 | 3 | 31.93 | 352.8 | 2.77 | 66.5 | 1.753 | 0.65 | 0.51 | 0 | 0 | 0.90 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; high strain Δ 31.9
|
|
| T22 T22 |
|
51 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56882059
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 424.5 · logP 4.23 · TPSA 77.8
|
44.6 | 0.57 | 2.4534 | -1.1932 | 9 | 21.58 | 424.5 | 4.23 | 77.8 | 2.391 | 0.36 | 0.83 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 21.6
|
|
| T22 T22 |
|
52 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0824
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 23.1, geometry warning, and strain ΔE = 23.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 266.3 · logP 0.15 · TPSA 117.9
|
44.9 | 0.50 | 3.4354 | -1.6822 | 6 | 23.07 | 266.3 | 0.15 | 117.9 | 2.355 | 0.73 | 0.36 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 23.1
|
|
| T22 T22 |
|
53 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z193095380
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 24.9, geometry warning, and strain ΔE = 24.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.4 · logP 2.67 · TPSA 64.6
|
41.8 | 0.32 | 4.7547 | -1.3693 | 5 | 24.89 | 333.4 | 2.67 | 64.6 | 2.379 | 0.65 | 0.53 | 0 | 0 | 0.91 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 24.9
|
|
| T22 T22 |
|
54 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_138
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.4 · logP 3.52 · TPSA 112.7
|
44.0 | 0.23 | 4.7542 | -1.0520 | 1 | 22.83 | 416.4 | 3.52 | 112.7 | 2.575 | 0.55 | 0.84 | 0 | 0 | 0.46 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 22.8
|
|
| T22 T22 |
|
55 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56811143
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.9 · logP 3.53 · TPSA 75.3
|
42.6 | 0.48 | 2.9209 | -1.1721 | 12 | 10.72 | 423.9 | 3.53 | 75.3 | 2.288 | 0.55 | 0.70 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash
|
|
| T22 T22 |
|
56 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_32
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes; high strain Δ 43.7, geometry warning, and strain ΔE = 43.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 315.3 · logP 0.76 · TPSA 136.4
|
48.5 | 0.58 | 2.5587 | -1.5357 | 5 | 43.75 | 315.3 | 0.76 | 136.4 | 3.508 | 0.66 | 0.83 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 3 clashes; 2 protein clashes; high strain Δ 43.7
|
|
| T22 T22 |
|
57 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1537384907
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 4.36 · TPSA 59.1
|
41.0 | 0.61 | 1.9087 | -1.2628 | 17 | 10.73 | 344.4 | 4.36 | 59.1 | 2.458 | 0.62 | 0.52 | 0 | 0 | 0.70 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash
|
|
| T22 T22 |
|
58 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0624
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 30.5, geometry warning, and strain ΔE = 30.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.5 · logP 2.16 · TPSA 144.0
|
42.6 | 0.58 | 2.3851 | -1.3038 | 6 | 30.48 | 395.5 | 2.16 | 144.0 | 2.694 | 0.42 | 0.65 | 0 | 0 | 0.45 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 30.5
|
|
| T22 T22 |
|
59 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0822
reasonable synthesis profile
DetailsWhy selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.7, geometry warning, and strain ΔE = 31.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP -0.26 · TPSA 144.0
|
44.2 | 0.60 | 2.6818 | -1.6945 | 6 | 31.67 | 281.3 | -0.26 | 144.0 | 2.358 | 0.60 | 0.35 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.7
|
|
| T22 T22 |
|
60 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z31477806
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 5 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 290.3 · logP 1.26 · TPSA 89.3
|
45.0 | 0.33 | 4.8200 | -1.5284 | 7 | 14.44 | 290.3 | 1.26 | 89.3 | 1.496 | 0.73 | 0.65 | 0 | 0 | 0.89 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 5 protein clashes
|
|
| T22 T22 |
|
61 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_68
clean safety profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 5 protein contact clashes; moderate strain Δ 25.9, geometry warning, and strain ΔE = 25.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 448.4 · logP 1.68 · TPSA 52.0
|
39.0 | 0.65 | 1.0097 | -1.0091 | 18 | 25.91 | 448.4 | 1.68 | 52.0 | 5.564 | 0.76 | 0.55 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 5 protein contact clashes; moderate strain Δ 25.9
|
|
| T22 T22 |
|
62 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1546616194
well-buried hydrophobics
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 4 protein clashes; high strain Δ 38.7, geometry warning, and strain ΔE = 38.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 287.2 · logP -0.05 · TPSA 136.4
|
43.8 | 0.48 | 3.9117 | -1.6429 | 5 | 38.73 | 287.2 | -0.05 | 136.4 | 3.382 | 0.70 | 0.44 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 3 clashes; 4 protein clashes; high strain Δ 38.7
|
|
| T22 T22 |
|
63 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49576315
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 4 protein clashes; high strain Δ 57.3, geometry warning, and strain ΔE = 57.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 379.4 · logP 1.70 · TPSA 143.3
|
41.9 | 0.30 | 4.9136 | -1.3388 | 2 | 57.33 | 379.4 | 1.70 | 143.3 | 2.726 | 0.63 | 0.81 | 0 | 0 | 0.53 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; high strain Δ 57.3
|
|
| T22 T22 |
|
64 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56857031
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 26.4, geometry warning, and strain ΔE = 26.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 304.4 · logP 2.82 · TPSA 88.1
|
40.5 | 0.64 | 2.4901 | -1.5777 | 7 | 26.43 | 304.4 | 2.82 | 88.1 | 2.235 | 0.34 | 0.42 | 0 | 0 | 0.88 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 26.4
|
|
| T22 T22 |
|
65 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45874785
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.6 · logP 2.47 · TPSA 61.9
|
42.1 | 0.47 | 2.8419 | -1.1217 | 7 | 18.04 | 419.6 | 2.47 | 61.9 | 1.975 | 0.55 | 0.56 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 11 clashes; 1 protein clash
|
|
| T22 T22 |
|
66 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45900933
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.5 · logP 2.21 · TPSA 52.6
|
41.7 | 0.45 | 3.1882 | -1.2120 | 6 | 14.78 | 393.5 | 2.21 | 52.6 | 1.993 | 0.59 | 0.46 | 0 | 0 | 0.81 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T22 T22 |
|
67 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z27745923
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 3.78 · TPSA 57.7
|
35.9 | 0.29 | 4.4842 | -1.1088 | 16 | 11.98 | 394.5 | 3.78 | 57.7 | 1.859 | 0.62 | 0.69 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 3 protein clashes
|
|
| T22 T22 |
|
68 | 2 Front 2 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z27521484
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 382.4 · logP 4.22 · TPSA 79.9
|
31.6 | 0.16 | 5.5556 | -1.0693 | 10 | 12.27 | 382.4 | 4.22 | 79.9 | 2.099 | 0.40 | 0.61 | 0 | 0 | 0.56 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 4 protein clashes
|
|
| T22 T22 |
|
69 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45956756
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 263.3 · logP 3.82 · TPSA 53.4
|
50.1 | 0.65 | 1.6652 | -1.5328 | 11 | 10.68 | 263.3 | 3.82 | 53.4 | 2.238 | 0.73 | 0.71 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash
|
|
| T22 T22 |
|
70 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC271
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 297.3 · logP 2.30 · TPSA 91.4
|
49.8 | 0.60 | 2.1446 | -1.4285 | 10 | 14.78 | 297.3 | 2.30 | 91.4 | 2.229 | 0.70 | 0.75 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash
|
|
| T22 T22 |
|
71 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45537946
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 0.95 · TPSA 106.3
|
49.8 | 0.51 | 3.4621 | -1.5542 | 7 | 23.37 | 344.4 | 0.95 | 106.3 | 1.784 | 0.73 | 0.72 | 0 | 0 | 0.84 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.4
|
|
| T22 T22 |
|
72 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56811592
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 20.7, geometry warning, and strain ΔE = 20.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 2.47 · TPSA 92.4
|
43.5 | 0.51 | 2.8200 | -1.2495 | 8 | 20.72 | 375.5 | 2.47 | 92.4 | 2.554 | 0.62 | 0.47 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 20.7
|
|
| T22 T22 |
|
73 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z96281652
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 373.4 · logP 1.88 · TPSA 90.0
|
45.2 | 0.52 | 2.2390 | -1.1838 | 9 | 25.61 | 373.4 | 1.88 | 90.0 | 2.419 | 0.73 | 0.60 | 0 | 0 | 0.76 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 25.6
|
|
| T22 T22 |
|
74 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57009636
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 315.3 · logP 1.60 · TPSA 88.0
|
43.4 | 0.38 | 4.1059 | -1.3993 | 8 | 18.59 | 315.3 | 1.60 | 88.0 | 2.587 | 0.73 | 0.62 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
|
|
| T22 T22 |
|
75 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_84
native-like contacts
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 23.5, geometry warning, and strain ΔE = 23.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.4 · logP 2.71 · TPSA 101.6
|
41.8 | 0.59 | 1.8869 | -1.0851 | 14 | 23.53 | 378.4 | 2.71 | 101.6 | 3.826 | 0.58 | 0.69 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 23.5
|
|
| T22 T22 |
|
76 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z19455379
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 1.88 · TPSA 124.3
|
43.5 | 0.44 | 3.2742 | -1.3024 | 8 | 15.91 | 344.4 | 1.88 | 124.3 | 2.724 | 0.70 | 0.56 | 0 | 0 | 0.49 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
|
|
| T22 T22 |
|
77 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z44305068
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.8 · logP 3.74 · TPSA 102.4
|
42.5 | 0.54 | 2.4016 | -1.1587 | 11 | 21.63 | 400.8 | 3.74 | 102.4 | 2.336 | 0.58 | 0.51 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 21.6
|
|
| T22 T22 |
|
78 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z2418739356
reasonable synthesis profile
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.8 · logP 3.46 · TPSA 66.4
|
43.5 | 0.51 | 3.0197 | -1.5280 | 8 | 13.61 | 311.8 | 3.46 | 66.4 | 2.005 | 0.65 | 0.36 | 0 | 0 | 0.91 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 1 protein clash
|
|
| T22 T22 |
|
79 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0569
reasonable synthesis profile
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.6, geometry warning, and strain ΔE = 20.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 324.3 · logP 0.23 · TPSA 141.2
|
42.8 | 0.50 | 3.0034 | -1.3992 | 7 | 20.61 | 324.3 | 0.23 | 141.2 | 2.403 | 0.60 | 0.39 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.6
|
|
| T22 T22 |
|
80 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z23213151
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 2.19 · TPSA 90.3
|
41.3 | 0.45 | 3.1419 | -1.2439 | 11 | 16.58 | 355.4 | 2.19 | 90.3 | 3.225 | 0.62 | 0.66 | 0 | 0 | 0.50 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 2 protein clashes
|
|
| T22 T22 |
|
81 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45537933
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 326.4 · logP 0.81 · TPSA 106.3
|
48.3 | 0.48 | 3.5922 | -1.5400 | 7 | 22.81 | 326.4 | 0.81 | 106.3 | 1.714 | 0.73 | 0.64 | 0 | 0 | 0.85 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 22.8
|
|
| T22 T22 |
|
82 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_316
Hydrophobic burial looks adequate: 31% exposed (9/29 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.6 · logP 3.87 · TPSA 45.9
|
40.7 | 0.52 | 2.4078 | -1.0957 | 9 | 18.64 | 426.6 | 3.87 | 45.9 | 4.892 | 0.62 | 0.53 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 1 protein clash
|
|
| T22 T22 |
|
83 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57176222
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 5 protein clashes; moderate strain Δ 25.1, geometry warning, and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 302.2 · logP 1.99 · TPSA 131.4
|
39.2 | 0.28 | 5.1522 | -1.4452 | 6 | 25.15 | 302.2 | 1.99 | 131.4 | 2.545 | 0.63 | 0.57 | 0 | 0 | 0.43 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 5 protein clashes; moderate strain Δ 25.1
|
|
| T22 T22 |
|
84 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57906432
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 378.8 · logP 3.60 · TPSA 102.4
|
40.5 | 0.39 | 3.6784 | -1.2049 | 9 | 13.92 | 378.8 | 3.60 | 102.4 | 2.123 | 0.58 | 0.53 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
|
|
| T22 T22 |
|
85 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57906434
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 372.4 · logP 2.94 · TPSA 102.4
|
41.8 | 0.42 | 4.2802 | -1.4686 | 10 | 13.31 | 372.4 | 2.94 | 102.4 | 2.206 | 0.58 | 0.66 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
|
|
| T22 T22 |
|
86 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z27681463
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.8, geometry warning, and strain ΔE = 31.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 425.5 · logP 2.13 · TPSA 122.7
|
40.1 | 0.37 | 3.6179 | -1.0818 | 5 | 31.85 | 425.5 | 2.13 | 122.7 | 2.678 | 0.52 | 0.59 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.8
|
|
| T22 T22 |
|
87 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_182
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 20.3, geometry warning, and strain ΔE = 20.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 366.4 · logP 2.33 · TPSA 102.1
|
46.1 | 0.44 | 3.5038 | -1.2640 | 7 | 20.27 | 366.4 | 2.33 | 102.1 | 2.517 | 0.58 | 0.84 | 0 | 0 | 0.59 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 20.3
|
|
| T22 T22 |
|
88 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_97
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 411.5 · logP 3.53 · TPSA 94.5
|
38.1 | 0.32 | 4.6365 | -1.2366 | 10 | 13.65 | 411.5 | 3.53 | 94.5 | 3.083 | 0.55 | 0.68 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
|
|
| T22 T22 |
|
89 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2022_32
well-buried hydrophobics, native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 4 protein clashes; high strain Δ 70.8, geometry warning, and strain ΔE = 70.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 443.2 · logP -2.27 · TPSA 243.3
|
39.0 | 0.45 | 4.1725 | -1.4993 | 5 | 70.77 | 443.2 | -2.27 | 243.3 | 4.301 | 0.56 | 0.79 | 0 | 0 | 0.19 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 4 protein clashes; high strain Δ 70.8
|
|
| T22 T22 |
|
90 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_339
60% of hydrophobic surface is solvent-exposed (6/10 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.4, geometry warning, and strain ΔE = 34.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 304.7 · logP -2.11 · TPSA 144.2
|
38.7 | 0.42 | 3.7636 | -1.5316 | 6 | 34.43 | 304.7 | -2.11 | 144.2 | 4.016 | 0.60 | 0.55 | 0 | 0 | 0.42 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.4
|
|
| T22 T22 |
|
91 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_303
56% of hydrophobic surface appears solvent-exposed (15/27 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.6 · logP 3.42 · TPSA 29.4
|
37.1 | 0.51 | 2.2161 | -1.0122 | 15 | 15.78 | 398.6 | 3.42 | 29.4 | 4.902 | 0.62 | 0.56 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash
|
|
| T22 T22 |
|
92 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57392960
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.9 · logP 4.26 · TPSA 73.3
|
38.3 | 0.45 | 3.4768 | -1.2819 | 10 | 15.90 | 419.9 | 4.26 | 73.3 | 2.733 | 0.40 | 0.61 | 0 | 0 | 0.49 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
|
|
| T22 T22 |
|
93 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z32377576
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 5 protein clashes; moderate strain Δ 20.4, geometry warning, and strain ΔE = 20.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.9 · logP 0.61 · TPSA 149.4
|
40.8 | 0.28 | 5.6257 | -1.4671 | 8 | 20.45 | 417.9 | 0.61 | 149.4 | 2.006 | 0.56 | 0.78 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 5 protein clashes; moderate strain Δ 20.4
|
|
| T22 T22 |
|
94 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z55294982
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.3 · logP 4.81 · TPSA 78.5
|
36.8 | 0.37 | 3.7896 | -1.1326 | 12 | 14.14 | 428.3 | 4.81 | 78.5 | 1.948 | 0.43 | 0.63 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
|
|
| T22 T22 |
|
95 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0404
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 4 protein clashes; high strain Δ 31.2, geometry warning, and strain ΔE = 31.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 298.3 · logP 0.82 · TPSA 120.8
|
40.3 | 0.30 | 5.2378 | -1.6345 | 4 | 31.20 | 298.3 | 0.82 | 120.8 | 2.451 | 0.66 | 0.49 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 4 protein clashes; high strain Δ 31.2
|
|
| T22 T22 |
|
96 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30932242
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 346.5 · logP 2.56 · TPSA 89.3
|
41.0 | 0.43 | 3.4317 | -1.2808 | 12 | 14.35 | 346.5 | 2.56 | 89.3 | 1.768 | 0.62 | 0.58 | 0 | 0 | 0.89 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
|
|
| T22 T22 |
|
97 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45872631
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 2.07 · TPSA 52.6
|
41.4 | 0.54 | 2.6836 | -1.3357 | 12 | 14.26 | 375.5 | 2.07 | 52.6 | 1.868 | 0.59 | 0.60 | 0 | 0 | 0.83 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 10 clashes; 1 protein clash
|
|
| T22 T22 |
|
98 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TbNat_133
67% of hydrophobic surface is solvent-exposed (12/18 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.3 · logP 2.08 · TPSA 106.2
|
33.6 | 0.27 | 4.7268 | -1.2377 | 12 | 17.41 | 344.3 | 2.08 | 106.2 | 4.172 | 0.73 | 0.44 | 0 | 0 | 0.82 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 4 protein clashes
|
|
| T22 T22 |
|
99 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0837
reasonable synthesis profile
DetailsWhy selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 26.7, geometry warning, and strain ΔE = 26.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP -0.26 · TPSA 144.0
|
37.2 | 0.34 | 4.7186 | -1.5924 | 6 | 26.68 | 281.3 | -0.26 | 144.0 | 2.415 | 0.60 | 0.36 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 26.7
|
|
| T22 T22 |
|
100 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_301
native-like contacts
DetailsWhy selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.6 · logP 3.60 · TPSA 42.5
|
37.0 | 0.58 | 1.5392 | -0.9976 | 15 | 16.57 | 412.6 | 3.60 | 42.5 | 4.885 | 0.55 | 0.66 | 0 | 0 | 0.56 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 15 clashes; 5 protein contact clashes
|
|
| T22 T22 |
|
101 | 3 Front 3 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_54
clean safety profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 18 clashes; 2 protein clashes; high strain Δ 59.8, geometry warning, and strain ΔE = 59.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.6 · logP 1.94 · TPSA 58.4
|
24.7 | 0.28 | 3.9721 | -1.1568 | 14 | 59.78 | 406.6 | 1.94 | 58.4 | 5.458 | 0.76 | 0.45 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 18 clashes; 2 protein clashes; high strain Δ 59.8
|
|
| T22 T22 |
|
102 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z133716394
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 20.6, geometry warning, and strain ΔE = 20.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 374.9 · logP 1.81 · TPSA 97.5
|
48.1 | 0.48 | 3.9368 | -1.6330 | 8 | 20.56 | 374.9 | 1.81 | 97.5 | 1.870 | 0.73 | 0.73 | 0 | 0 | 0.86 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 20.6
|
|
| T22 T22 |
|
103 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z44852102
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 22.6, geometry warning, and strain ΔE = 22.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.4 · logP 2.50 · TPSA 73.6
|
44.8 | 0.51 | 2.6883 | -1.2497 | 11 | 22.62 | 321.4 | 2.50 | 73.6 | 2.441 | 0.62 | 0.77 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 22.6
|
|
| T22 T22 |
|
104 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z286182030
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 32.4, geometry warning, and strain ΔE = 32.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 439.7 · logP 2.69 · TPSA 106.3
|
45.5 | 0.50 | 3.2653 | -1.4800 | 7 | 32.40 | 439.7 | 2.69 | 106.3 | 2.129 | 0.62 | 0.72 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 32.4
|
|
| T22 T22 |
|
105 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_14
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 29.9, geometry warning, and strain ΔE = 29.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 371.4 · logP 3.04 · TPSA 63.4
|
45.9 | 0.49 | 2.6838 | -1.1624 | 7 | 29.90 | 371.4 | 3.04 | 63.4 | 2.222 | 0.62 | 0.72 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 29.9
|
|
| T22 T22 |
|
106 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z19352754
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.0, geometry warning, and strain ΔE = 26.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 381.4 · logP 1.83 · TPSA 100.6
|
43.7 | 0.49 | 2.7504 | -1.1322 | 11 | 25.96 | 381.4 | 1.83 | 100.6 | 2.421 | 0.70 | 0.61 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.0
|
|
| T22 T22 |
|
107 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z195195302
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 351.4 · logP 1.92 · TPSA 101.0
|
44.4 | 0.52 | 2.8331 | -1.2933 | 12 | 21.61 | 351.4 | 1.92 | 101.0 | 1.964 | 0.70 | 0.63 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 21.6
|
|
| T22 T22 |
|
108 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_Leish_40
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 2.47 · TPSA 104.5
|
43.1 | 0.55 | 2.7271 | -1.2073 | 11 | 26.97 | 388.5 | 2.47 | 104.5 | 2.849 | 0.58 | 0.62 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 27.0
|
|
| T22 T22 |
|
109 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_190
72% of hydrophobic surface is solvent-exposed (13/18 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.6, geometry warning, and strain ΔE = 24.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 382.4 · logP 3.17 · TPSA 61.5
|
41.7 | 0.64 | 1.4336 | -1.1746 | 13 | 24.58 | 382.4 | 3.17 | 61.5 | 3.524 | 0.50 | 0.64 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.6
|
|
| T22 T22 |
|
110 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z73762419
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.2, geometry warning, and strain ΔE = 25.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 353.4 · logP 1.68 · TPSA 89.3
|
42.2 | 0.43 | 3.2807 | -1.1588 | 11 | 25.20 | 353.4 | 1.68 | 89.3 | 2.045 | 0.70 | 0.60 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.2
|
|
| T22 T22 |
|
111 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z28905104
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 2.51 · TPSA 57.7
|
43.6 | 0.36 | 3.5296 | -1.1275 | 7 | 16.99 | 388.5 | 2.51 | 57.7 | 2.068 | 0.65 | 0.69 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
|
|
| T22 T22 |
|
112 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z314612464
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 21.8, geometry warning, and strain ΔE = 21.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 314.4 · logP 3.04 · TPSA 68.3
|
42.7 | 0.54 | 2.6917 | -1.3959 | 11 | 21.77 | 314.4 | 3.04 | 68.3 | 1.909 | 0.62 | 0.52 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 21.8
|
|
| T22 T22 |
|
113 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0432
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 3 protein clashes; high strain Δ 37.1, geometry warning, and strain ΔE = 37.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.4 · logP 3.33 · TPSA 110.3
|
41.6 | 0.32 | 4.7519 | -1.2603 | 6 | 37.11 | 398.4 | 3.33 | 110.3 | 2.030 | 0.58 | 0.79 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 3 protein clashes; high strain Δ 37.1
|
|
| T22 T22 |
|
114 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_626
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.7, geometry warning, and strain ΔE = 22.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 343.5 · logP 1.71 · TPSA 110.9
|
41.3 | 0.39 | 4.0724 | -1.4455 | 11 | 22.65 | 343.5 | 1.71 | 110.9 | 2.415 | 0.73 | 0.60 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.7
|
|
| T22 T22 |
|
115 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_22
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 3.33 · TPSA 73.0
|
39.9 | 0.53 | 2.4174 | -1.1963 | 15 | 19.71 | 354.4 | 3.33 | 73.0 | 2.288 | 0.62 | 0.56 | 0 | 0 | 0.78 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 2 protein clashes
|
|
| T22 T22 |
|
116 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_76
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 303.4 · logP 2.51 · TPSA 67.7
|
39.1 | 0.42 | 3.3708 | -1.3162 | 9 | 16.26 | 303.4 | 2.51 | 67.7 | 2.507 | 0.62 | 0.41 | 0 | 0 | 0.76 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
|
|
| T22 T22 |
|
117 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC287
reasonable synthesis profile
DetailsWhy selected: Good docking score and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 22.4, geometry warning, and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 235.3 · logP -0.33 · TPSA 98.8
|
41.3 | 0.56 | 3.3999 | -1.8555 | 11 | 22.41 | 235.3 | -0.33 | 98.8 | 3.110 | 0.73 | 0.31 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 22.4
|
|
| T22 T22 |
|
118 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z29084466
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.5 · logP 2.27 · TPSA 109.6
|
40.2 | 0.42 | 3.3936 | -1.1892 | 13 | 18.50 | 393.5 | 2.27 | 109.6 | 2.062 | 0.62 | 0.68 | 0 | 0 | 0.81 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
|
|
| T22 T22 |
|
119 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0564
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 323.3 · logP 0.35 · TPSA 148.0
|
41.4 | 0.49 | 3.5289 | -1.5003 | 7 | 25.76 | 323.3 | 0.35 | 148.0 | 3.165 | 0.60 | 0.42 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 25.8
|
|
| T22 T22 |
|
120 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49638306
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.4 · logP 3.86 · TPSA 107.7
|
39.1 | 0.47 | 2.9838 | -1.1511 | 17 | 16.88 | 398.4 | 3.86 | 107.7 | 2.354 | 0.58 | 0.82 | 0 | 0 | 0.36 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash
|
|
| T22 T22 |
|
121 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z19129319
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.1, geometry warning, and strain ΔE = 31.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 399.5 · logP 2.21 · TPSA 90.2
|
37.9 | 0.38 | 4.1104 | -1.0935 | 13 | 31.09 | 399.5 | 2.21 | 90.2 | 2.186 | 0.58 | 0.60 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 31.1
|
|
| T22 T22 |
|
122 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC410
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 350.4 · logP 2.45 · TPSA 104.8
|
43.9 | 0.47 | 2.9638 | -1.2406 | 8 | 16.95 | 350.4 | 2.45 | 104.8 | 3.351 | 0.58 | 0.73 | 0 | 0 | 0.49 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 2 protein clashes
|
|
| T22 T22 |
|
123 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z31413736
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.8, geometry warning, and strain ΔE = 30.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.8 · logP 0.89 · TPSA 149.4
|
42.6 | 0.41 | 3.7355 | -1.4208 | 7 | 30.83 | 389.8 | 0.89 | 149.4 | 1.905 | 0.63 | 0.70 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.8
|
|
| T22 T22 |
|
124 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30932232
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 6 protein clashes; moderate strain Δ 22.5, geometry warning, and strain ΔE = 22.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.4 · logP 1.25 · TPSA 89.3
|
40.3 | 0.28 | 5.9101 | -1.7324 | 8 | 22.50 | 310.4 | 1.25 | 89.3 | 1.892 | 0.73 | 0.53 | 0 | 0 | 0.87 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 6 protein clashes; moderate strain Δ 22.5
|
|
| T22 T22 |
|
125 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TC1_170
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 307.3 · logP 2.41 · TPSA 94.8
|
43.3 | 0.49 | 2.9508 | -1.4399 | 8 | 19.35 | 307.3 | 2.41 | 94.8 | 2.210 | 0.58 | 0.61 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
|
|
| T22 T22 |
|
126 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_222
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 14 protein contact clashes; high strain Δ 43.6, geometry warning, and strain ΔE = 43.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.5 · logP 4.67 · TPSA 81.0
|
35.2 | 0.42 | 2.6318 | -0.9810 | 6 | 43.57 | 432.5 | 4.67 | 81.0 | 2.713 | 0.36 | 0.56 | 0 | 0 | 0.65 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 14 protein contact clashes; high strain Δ 43.6
|
|
| T22 T22 |
|
127 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z55260483
100% of hydrophobic surface is solvent-exposed (17/17 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 41.2, geometry warning, and strain ΔE = 41.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.5 · logP 1.15 · TPSA 123.4
|
35.5 | 0.58 | 2.3059 | -1.2572 | 17 | 41.24 | 400.5 | 1.15 | 123.4 | 4.009 | 0.63 | 0.50 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 41.2
|
|
| T22 T22 |
|
128 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49596752
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.0, geometry warning, and strain ΔE = 20.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 456.4 · logP 3.17 · TPSA 88.1
|
35.3 | 0.31 | 4.3601 | -1.1200 | 12 | 20.01 | 456.4 | 3.17 | 88.1 | 2.247 | 0.47 | 0.70 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.0
|
|
| T22 T22 |
|
129 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0976
well-buried hydrophobics, reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes; high strain Δ 43.7, geometry warning, and strain ΔE = 43.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 2.45 · TPSA 117.9
|
37.3 | 0.24 | 5.2793 | -1.2983 | 5 | 43.74 | 388.5 | 2.45 | 117.9 | 2.252 | 0.58 | 0.63 | 0 | 0 | 0.44 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; high strain Δ 43.7
|
|
| T22 T22 |
|
130 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_Leish_32
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 3 protein clashes; moderate strain Δ 20.5, geometry warning, and strain ΔE = 20.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 465.6 · logP 3.11 · TPSA 87.7
|
32.6 | 0.20 | 4.8370 | -0.9237 | 9 | 20.49 | 465.6 | 3.11 | 87.7 | 2.397 | 0.44 | 0.60 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 3 protein clashes; moderate strain Δ 20.5
|
|
| T22 T22 |
|
131 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56174576
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 370.4 · logP 3.76 · TPSA 66.5
|
36.7 | 0.30 | 4.2285 | -1.1666 | 9 | 15.55 | 370.4 | 3.76 | 66.5 | 2.124 | 0.62 | 0.41 | 0 | 0 | 0.76 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
|
|
| T22 T22 |
|
132 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_108
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 465.5 · logP 3.26 · TPSA 61.4
|
28.9 | 0.31 | 3.8042 | -0.8822 | 16 | 15.41 | 465.5 | 3.26 | 61.4 | 3.403 | 0.36 | 0.66 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 2 protein clashes
|
|
| T22 T22 |
|
133 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_66
78% of hydrophobic surface is solvent-exposed (21/27 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 5 protein contact clashes; moderate strain Δ 23.0, geometry warning, and strain ΔE = 23.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 487.5 · logP 4.02 · TPSA 50.8
|
28.6 | 0.61 | 1.2737 | -0.9599 | 21 | 23.04 | 487.5 | 4.02 | 50.8 | 4.999 | 0.32 | 0.53 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 5 protein contact clashes; moderate strain Δ 23.0
|
|
| T22 T22 |
|
134 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57300836
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.9 · logP 4.27 · TPSA 66.5
|
33.2 | 0.28 | 4.6230 | -1.2211 | 9 | 14.47 | 386.9 | 4.27 | 66.5 | 2.119 | 0.43 | 0.45 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
|
|
| T22 T22 |
|
135 | 4 Front 4 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK174
95% of hydrophobic surface is solvent-exposed (20/21 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 452.0 · logP 5.01 · TPSA 64.8
|
21.4 | 0.22 | 4.9962 | -1.0466 | 20 | 15.08 | 452.0 | 5.01 | 64.8 | 4.194 | 0.36 | 0.55 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 3 protein clashes
|
|
| T22 T22 |
|
136 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK178
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 383.5 · logP 1.19 · TPSA 96.2
|
44.0 | 0.53 | 2.3627 | -1.1807 | 12 | 25.83 | 383.5 | 1.19 | 96.2 | 2.535 | 0.70 | 0.67 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 25.8
|
|
| T22 T22 |
|
137 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z16382399
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 31.2, geometry warning, and strain ΔE = 31.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.5 · logP 1.94 · TPSA 98.1
|
42.9 | 0.42 | 3.3462 | -1.0915 | 8 | 31.16 | 431.5 | 1.94 | 98.1 | 3.026 | 0.66 | 0.69 | 0 | 0 | 0.43 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 31.2
|
|
| T22 T22 |
|
138 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_101
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.0, geometry warning, and strain ΔE = 26.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.5 · logP 2.27 · TPSA 89.7
|
41.1 | 0.38 | 4.0318 | -1.2085 | 9 | 25.96 | 389.5 | 2.27 | 89.7 | 3.687 | 0.58 | 0.84 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.0
|
|
| T22 T22 |
|
139 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49597668
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 23.6, geometry warning, and strain ΔE = 23.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 414.9 · logP 3.87 · TPSA 104.0
|
41.7 | 0.36 | 3.7226 | -1.1064 | 7 | 23.57 | 414.9 | 3.87 | 104.0 | 2.415 | 0.55 | 0.75 | 0 | 0 | 0.36 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 23.6
|
|
| T22 T22 |
|
140 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z29466897
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 3 protein clashes; high strain Δ 42.8, geometry warning, and strain ΔE = 42.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 349.4 · logP 2.43 · TPSA 98.5
|
40.3 | 0.38 | 4.3128 | -1.1992 | 8 | 42.84 | 349.4 | 2.43 | 98.5 | 2.295 | 0.58 | 0.59 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; high strain Δ 42.8
|
|
| T22 T22 |
|
141 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_3457
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 4 clashes; 3 protein clashes, geometry warning, and strain ΔE = 19.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 341.4 · logP -1.28 · TPSA 124.6
|
40.7 | 0.48 | 3.5993 | -1.5090 | 13 | 19.25 | 341.4 | -1.28 | 124.6 | 3.078 | 0.63 | 0.69 | 0 | 0 | 0.46 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
|
|
| T22 T22 |
|
142 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_167
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 4 protein clashes; high strain Δ 45.7, geometry warning, and strain ΔE = 45.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 342.4 · logP 1.13 · TPSA 129.6
|
43.3 | 0.42 | 4.0549 | -1.4931 | 8 | 45.66 | 342.4 | 1.13 | 129.6 | 2.479 | 0.70 | 0.82 | 0 | 0 | 0.70 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 4 protein clashes; high strain Δ 45.7
|
|
| T22 T22 |
|
143 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC490
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 3.58 · TPSA 92.4
|
39.6 | 0.51 | 2.4596 | -1.1771 | 14 | 17.13 | 394.5 | 3.58 | 92.4 | 3.774 | 0.58 | 0.73 | 0 | 0 | 0.63 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 1 protein clash
|
|
| T22 T22 |
|
144 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z87656593
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 421.5 · logP 2.13 · TPSA 109.6
|
39.4 | 0.40 | 4.0948 | -1.3078 | 13 | 17.80 | 421.5 | 2.13 | 109.6 | 2.563 | 0.58 | 0.77 | 0 | 0 | 0.77 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 4 protein clashes
|
|
| T22 T22 |
|
145 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TC1_185
85% of hydrophobic surface is solvent-exposed (11/13 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 44.6, geometry warning, and strain ΔE = 44.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 323.3 · logP 0.80 · TPSA 120.6
|
37.2 | 0.46 | 3.1645 | -1.3803 | 11 | 44.59 | 323.3 | 0.80 | 120.6 | 3.454 | 0.70 | 0.49 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 44.6
|
|
| T22 T22 |
|
146 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0547
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.4 · logP 0.40 · TPSA 153.1
|
41.5 | 0.46 | 3.3593 | -1.4021 | 7 | 26.99 | 322.4 | 0.40 | 153.1 | 2.242 | 0.60 | 0.45 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 27.0
|
|
| T22 T22 |
|
147 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_93
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.7, geometry warning, and strain ΔE = 20.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.5 · logP 3.72 · TPSA 93.2
|
36.6 | 0.37 | 3.8890 | -1.0943 | 14 | 20.74 | 416.5 | 3.72 | 93.2 | 2.266 | 0.55 | 0.65 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 20.7
|
|
| T22 T22 |
|
148 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56821783
reasonable synthesis profile
DetailsWhy selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 0.14 · TPSA 77.4
|
39.7 | 0.55 | 3.2525 | -1.5903 | 15 | 25.00 | 332.4 | 0.14 | 77.4 | 2.938 | 0.70 | 0.50 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 25.0
|
|
| T22 T22 |
|
149 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z26825047
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 22.2, geometry warning, and strain ΔE = 22.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 463.0 · logP 3.75 · TPSA 92.3
|
37.0 | 0.43 | 2.8588 | -1.0766 | 11 | 22.21 | 463.0 | 3.75 | 92.3 | 2.330 | 0.44 | 0.64 | 0 | 0 | 0.62 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 22.2
|
|
| T22 T22 |
|
150 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC313
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 24.1, geometry warning, and strain ΔE = 24.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 455.6 · logP 3.78 · TPSA 118.4
|
36.7 | 0.31 | 4.4153 | -1.0970 | 8 | 24.08 | 455.6 | 3.78 | 118.4 | 2.132 | 0.44 | 0.63 | 0 | 0 | 0.52 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 24.1
|
|
| T22 T22 |
|
151 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z31474376
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.5 · logP 3.76 · TPSA 66.5
|
40.4 | 0.50 | 2.6444 | -1.1646 | 14 | 26.51 | 380.5 | 3.76 | 66.5 | 1.711 | 0.62 | 0.59 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.5
|
|
| T22 T22 |
|
152 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z89541367
reasonable synthesis profile
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.4 · logP 3.22 · TPSA 74.8
|
34.8 | 0.41 | 3.2745 | -1.1112 | 14 | 19.57 | 361.4 | 3.22 | 74.8 | 2.697 | 0.62 | 0.38 | 0 | 0 | 0.75 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash
|
|
| T22 T22 |
|
153 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56782307
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 43.9, geometry warning, and strain ΔE = 43.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 1.48 · TPSA 109.4
|
36.4 | 0.34 | 3.8564 | -1.0373 | 9 | 43.92 | 410.5 | 1.48 | 109.4 | 2.915 | 0.70 | 0.45 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 43.9
|
|
| T22 T22 |
|
154 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49576055
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 4 protein clashes; high strain Δ 58.8, geometry warning, and strain ΔE = 58.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 365.3 · logP 1.31 · TPSA 143.3
|
40.2 | 0.39 | 4.4347 | -1.4337 | 7 | 58.79 | 365.3 | 1.31 | 143.3 | 2.709 | 0.63 | 0.78 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 4 protein clashes; high strain Δ 58.8
|
|
| T22 T22 |
|
155 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_11
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.4 · logP 3.12 · TPSA 90.4
|
35.5 | 0.37 | 3.4191 | -1.0440 | 15 | 13.95 | 389.4 | 3.12 | 90.4 | 2.839 | 0.58 | 0.64 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
|
|
| T22 T22 |
|
156 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_37
48% of hydrophobic surface appears solvent-exposed (11/23 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.9 · logP 3.65 · TPSA 33.9
|
37.6 | 0.42 | 3.0648 | -1.1194 | 11 | 26.98 | 380.9 | 3.65 | 33.9 | 3.546 | 0.62 | 0.57 | 0 | 0 | 0.72 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 27.0
|
|
| T22 T22 |
|
157 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_404
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.3, geometry warning, and strain ΔE = 24.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.3 · logP 1.17 · TPSA 79.5
|
33.8 | 0.49 | 2.9967 | -1.3240 | 17 | 24.32 | 311.3 | 1.17 | 79.5 | 2.905 | 0.67 | 0.48 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.3
|
|
| T22 T22 |
|
158 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z45692840
reasonable synthesis profile
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.5 · logP 3.54 · TPSA 49.4
|
36.8 | 0.49 | 3.1179 | -1.4445 | 15 | 22.87 | 322.5 | 3.54 | 49.4 | 1.969 | 0.65 | 0.38 | 0 | 0 | 0.94 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.9
|
|
| T22 T22 |
|
159 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30857952
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 4 protein clashes; moderate strain Δ 24.7, geometry warning, and strain ΔE = 24.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.4 · logP 1.24 · TPSA 98.5
|
39.6 | 0.38 | 4.2806 | -1.4806 | 10 | 24.68 | 348.4 | 1.24 | 98.5 | 1.743 | 0.70 | 0.53 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; moderate strain Δ 24.7
|
|
| T22 T22 |
|
160 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_34
73% of hydrophobic surface is solvent-exposed (8/11 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 4 protein clashes; high strain Δ 38.6, geometry warning, and strain ΔE = 38.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 313.3 · logP 0.51 · TPSA 136.4
|
39.0 | 0.43 | 4.3231 | -1.6537 | 8 | 38.64 | 313.3 | 0.51 | 136.4 | 3.635 | 0.66 | 0.52 | 0 | 0 | 0.66 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 4 clashes; 4 protein clashes; high strain Δ 38.6
|
|
| T22 T22 |
|
161 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
TC325
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 5 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.4 · logP 0.65 · TPSA 86.0
|
39.8 | 0.28 | 5.3882 | -1.5669 | 10 | 17.02 | 321.4 | 0.65 | 86.0 | 2.740 | 0.70 | 0.77 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 5 protein clashes
|
|
| T22 T22 |
|
162 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_75
64% of hydrophobic surface is solvent-exposed (14/22 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.5 · logP 2.86 · TPSA 86.9
|
36.7 | 0.44 | 2.8078 | -1.1043 | 14 | 15.71 | 369.5 | 2.86 | 86.9 | 3.481 | 0.58 | 0.61 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
|
|
| T22 T22 |
|
163 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z29007297
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.0, geometry warning, and strain ΔE = 28.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 441.9 · logP 1.57 · TPSA 104.8
|
36.8 | 0.32 | 4.4388 | -1.1188 | 11 | 27.99 | 441.9 | 1.57 | 104.8 | 2.131 | 0.63 | 0.70 | 0 | 0 | 0.70 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Alerts x1, Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.0
|
|
| T22 T22 |
|
164 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1541815088
reasonable synthesis profile
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 307.4 · logP 2.82 · TPSA 75.6
|
38.6 | 0.47 | 3.1300 | -1.4577 | 9 | 25.62 | 307.4 | 2.82 | 75.6 | 1.981 | 0.62 | 0.30 | 0 | 0 | 0.91 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 25.6
|
|
| T22 T22 |
|
165 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK194
45% of hydrophobic surface appears solvent-exposed (9/20 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 17 clashes; 3 protein clashes; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.0 · logP 4.48 · TPSA 63.2
|
31.4 | 0.27 | 4.5946 | -1.1130 | 9 | 25.03 | 428.0 | 4.48 | 63.2 | 3.846 | 0.43 | 0.50 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 17 clashes; 3 protein clashes; moderate strain Δ 25.0
|
|
| T22 T22 |
|
166 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
ulfkktlib_1030
90% of hydrophobic surface is solvent-exposed (9/10 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 5 clashes; 4 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 270.2 · logP -2.77 · TPSA 144.2
|
33.4 | 0.28 | 5.8878 | -1.7587 | 9 | 25.72 | 270.2 | -2.77 | 144.2 | 4.022 | 0.60 | 0.46 | 0 | 0 | 0.39 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 5 clashes; 4 protein clashes; moderate strain Δ 25.7
|
|
| T22 T22 |
|
167 | 5 Front 5 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OSA_Lib_198
57% of hydrophobic surface appears solvent-exposed (16/28 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash; high strain Δ 31.9, geometry warning, and strain ΔE = 31.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 434.6 · logP 1.84 · TPSA 35.2
|
28.7 | 0.30 | 3.6898 | -0.9583 | 16 | 31.86 | 434.6 | 1.84 | 35.2 | 5.661 | 0.73 | 0.55 | 0 | 0 | 0.68 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 16 clashes; 1 protein clash; high strain Δ 31.9
|
|
| T22 T22 |
|
168 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56821211
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes; high strain Δ 35.9, geometry warning, and strain ΔE = 35.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 356.4 · logP 2.23 · TPSA 99.7
|
41.5 | 0.41 | 3.7830 | -1.3351 | 9 | 35.93 | 356.4 | 2.23 | 99.7 | 2.268 | 0.58 | 0.82 | 0 | 0 | 0.28 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; high strain Δ 35.9
|
|
| T22 T22 |
|
169 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK212
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 28.4, geometry warning, and strain ΔE = 28.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.80 · TPSA 100.6
|
39.9 | 0.41 | 2.7554 | -1.0057 | 11 | 28.42 | 409.5 | 3.80 | 100.6 | 3.610 | 0.66 | 0.80 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 28.4
|
|
| T22 T22 |
|
170 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z57100312
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 27.8, geometry warning, and strain ΔE = 27.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 320.4 · logP 2.52 · TPSA 90.4
|
40.4 | 0.52 | 2.7109 | -1.3401 | 12 | 27.79 | 320.4 | 2.52 | 90.4 | 2.508 | 0.58 | 0.60 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 27.8
|
|
| T22 T22 |
|
171 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1521553597
39% of hydrophobic surface appears solvent-exposed (9/23 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.9, geometry warning, and strain ΔE = 26.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.5 · logP 3.08 · TPSA 84.4
|
37.9 | 0.37 | 3.8126 | -1.1061 | 9 | 26.89 | 426.5 | 3.08 | 84.4 | 3.318 | 0.55 | 0.63 | 0 | 0 | 0.69 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 26.9
|
|
| T22 T22 |
|
172 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z104500108
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 25.1, geometry warning, and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 368.4 · logP 3.85 · TPSA 96.2
|
40.3 | 0.44 | 2.7887 | -1.1557 | 14 | 25.07 | 368.4 | 3.85 | 96.2 | 2.613 | 0.70 | 0.79 | 0 | 0 | 0.39 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 25.1
|
|
| T22 T22 |
|
173 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z33598736
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 35.1, geometry warning, and strain ΔE = 35.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.5 · logP 3.47 · TPSA 75.3
|
40.1 | 0.40 | 3.7799 | -1.1926 | 9 | 35.13 | 386.5 | 3.47 | 75.3 | 1.928 | 0.58 | 0.63 | 0 | 0 | 0.80 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 35.1
|
|
| T22 T22 |
|
174 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_26
native-like contacts
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.9, geometry warning, and strain ΔE = 25.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 403.5 · logP 3.62 · TPSA 69.5
|
37.2 | 0.35 | 3.9391 | -1.2573 | 11 | 25.90 | 403.5 | 3.62 | 69.5 | 3.452 | 0.62 | 0.75 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.9
|
|
| T22 T22 |
|
175 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49558975
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 2.25 · TPSA 120.0
|
39.4 | 0.40 | 3.9477 | -1.3511 | 10 | 25.84 | 354.4 | 2.25 | 120.0 | 2.513 | 0.55 | 0.73 | 0 | 0 | 0.33 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 25.8
|
|
| T22 T22 |
|
176 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
OHD_TB2021_21
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 48.8, geometry warning, and strain ΔE = 48.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.5 · logP 1.95 · TPSA 143.7
|
37.8 | 0.41 | 3.6485 | -1.2829 | 7 | 48.85 | 406.5 | 1.95 | 143.7 | 3.219 | 0.56 | 0.64 | 0 | 0 | 0.41 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 48.8
|
|
| T22 T22 |
|
177 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z17094078
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; high strain Δ 30.5, geometry warning, and strain ΔE = 30.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 401.4 · logP 2.23 · TPSA 131.3
|
37.6 | 0.28 | 4.1366 | -1.1343 | 8 | 30.51 | 401.4 | 2.23 | 131.3 | 2.158 | 0.52 | 0.84 | 0 | 0 | 0.56 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; high strain Δ 30.5
|
|
| T22 T22 |
|
178 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_128
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.2, geometry warning, and strain ΔE = 26.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 464.6 · logP 3.16 · TPSA 110.1
|
36.4 | 0.39 | 3.0387 | -0.9311 | 12 | 26.23 | 464.6 | 3.16 | 110.1 | 2.421 | 0.44 | 0.74 | 0 | 0 | 0.43 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 26.2
|
|
| T22 T22 |
|
179 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_chagas_42
71% of hydrophobic surface is solvent-exposed (15/21 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 49.1, geometry warning, and strain ΔE = 49.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 447.6 · logP 1.71 · TPSA 66.7
|
36.3 | 0.49 | 2.9871 | -1.1890 | 15 | 49.07 | 447.6 | 1.71 | 66.7 | 3.764 | 0.70 | 0.64 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 49.1
|
|
| T22 T22 |
|
180 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_HAT_107
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 29.6, geometry warning, and strain ΔE = 29.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 487.4 · logP 2.06 · TPSA 130.3
|
34.9 | 0.27 | 4.5378 | -1.0496 | 12 | 29.58 | 487.4 | 2.06 | 130.3 | 2.636 | 0.52 | 0.81 | 0 | 0 | 0.57 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 29.6
|
|
| T22 T22 |
|
181 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z334929348
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 29.1, geometry warning, and strain ΔE = 29.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.2 · logP 2.96 · TPSA 92.4
|
36.9 | 0.41 | 4.5122 | -1.6923 | 12 | 29.09 | 347.2 | 2.96 | 92.4 | 2.063 | 0.62 | 0.52 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 4 protein clashes; moderate strain Δ 29.1
|
|
| T22 T22 |
|
182 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0779
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 2 protein clashes; high strain Δ 75.4, geometry warning, and strain ΔE = 75.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 341.3 · logP -0.32 · TPSA 130.5
|
34.4 | 0.44 | 3.5134 | -1.3437 | 12 | 75.44 | 341.3 | -0.32 | 130.5 | 2.767 | 0.70 | 0.54 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; high strain Δ 75.4
|
|
| T22 T22 |
|
183 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z166606608
79% of hydrophobic surface is solvent-exposed (15/19 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.8, geometry warning, and strain ΔE = 25.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.3 · logP 2.14 · TPSA 84.6
|
33.9 | 0.48 | 2.6661 | -1.1670 | 15 | 25.75 | 352.3 | 2.14 | 84.6 | 3.259 | 0.58 | 0.39 | 0 | 0 | 0.73 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.8
|
|
| T22 T22 |
|
184 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z71577027
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 27.1, geometry warning, and strain ΔE = 27.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.4 · logP 2.84 · TPSA 108.4
|
37.1 | 0.34 | 4.1102 | -1.1569 | 13 | 27.05 | 369.4 | 2.84 | 108.4 | 1.882 | 0.58 | 0.68 | 0 | 0 | 0.64 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 27.1
|
|
| T22 T22 |
|
185 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
KB_Leish_29
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 437.6 · logP 4.30 · TPSA 110.9
|
35.6 | 0.33 | 4.1320 | -1.2022 | 8 | 26.47 | 437.6 | 4.30 | 110.9 | 2.434 | 0.36 | 0.76 | 0 | 0 | 0.48 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 26.5
|
|
| T22 T22 |
|
186 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0833
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; high strain Δ 40.6, geometry warning, and strain ΔE = 40.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.3 · logP -0.47 · TPSA 161.2
|
38.6 | 0.46 | 3.6267 | -1.3962 | 11 | 40.61 | 340.3 | -0.47 | 161.2 | 2.370 | 0.60 | 0.56 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; high strain Δ 40.6
|
|
| T22 T22 |
|
187 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0433
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 3 protein clashes; high strain Δ 39.8, geometry warning, and strain ΔE = 39.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.5 · logP 3.06 · TPSA 113.5
|
37.7 | 0.26 | 5.1245 | -1.1903 | 7 | 39.82 | 412.5 | 3.06 | 113.5 | 2.582 | 0.55 | 0.79 | 0 | 0 | 0.67 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 15 clashes; 3 protein clashes; high strain Δ 39.8
|
|
| T22 T22 |
|
188 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z68563450
Hydrophobic burial looks adequate: 33% exposed (8/24 atoms). No penalty flagged.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 45.9, geometry warning, and strain ΔE = 45.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.6 · logP 0.89 · TPSA 75.5
|
33.4 | 0.23 | 4.2287 | -0.9814 | 8 | 45.90 | 428.6 | 0.89 | 75.5 | 3.499 | 0.66 | 0.64 | 0 | 0 | 0.55 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 45.9
|
|
| T22 T22 |
|
189 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30004986
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 3 protein clashes; high strain Δ 31.2, geometry warning, and strain ΔE = 31.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 462.3 · logP 3.91 · TPSA 97.4
|
34.2 | 0.28 | 4.7900 | -1.2452 | 8 | 31.18 | 462.3 | 3.91 | 97.4 | 2.024 | 0.44 | 0.61 | 0 | 0 | 0.58 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 14 clashes; 3 protein clashes; high strain Δ 31.2
|
|
| T22 T22 |
|
190 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z79567126
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 27.9, geometry warning, and strain ΔE = 27.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 459.6 · logP 2.49 · TPSA 118.3
|
33.9 | 0.21 | 4.8260 | -0.9761 | 10 | 27.95 | 459.6 | 2.49 | 118.3 | 2.376 | 0.55 | 0.63 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 27.9
|
|
| T22 T22 |
|
191 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
MK169
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 27.9, geometry warning, and strain ΔE = 27.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.5 · logP 1.25 · TPSA 112.2
|
39.3 | 0.33 | 4.2135 | -1.2068 | 11 | 27.94 | 412.5 | 1.25 | 112.2 | 2.800 | 0.66 | 0.79 | 0 | 0 | 0.51 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 27.9
|
|
| T22 T22 |
|
192 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z30621155
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 4 protein clashes; high strain Δ 34.4, geometry warning, and strain ΔE = 34.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.4 · logP 1.43 · TPSA 99.5
|
36.2 | 0.24 | 4.9409 | -1.2103 | 11 | 34.41 | 380.4 | 1.43 | 99.5 | 2.295 | 0.70 | 0.73 | 0 | 0 | 0.74 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; high strain Δ 34.4
|
|
| T22 T22 |
|
193 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z1501480428
61% of hydrophobic surface is solvent-exposed (14/23 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 22.5, geometry warning, and strain ΔE = 22.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 411.5 · logP 2.17 · TPSA 65.4
|
34.2 | 0.34 | 3.8164 | -1.0416 | 14 | 22.48 | 411.5 | 2.17 | 65.4 | 3.720 | 0.62 | 0.62 | 0 | 0 | 0.71 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 22.5
|
|
| T22 T22 |
|
194 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z56835260
reasonable synthesis profile
DetailsWhy selected: Some docking support and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.4, geometry warning, and strain ΔE = 27.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 359.5 · logP 3.97 · TPSA 55.4
|
30.1 | 0.43 | 3.3974 | -1.3177 | 19 | 27.43 | 359.5 | 3.97 | 55.4 | 2.845 | 0.65 | 0.38 | 0 | 0 | 0.88 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.4
|
|
| T22 T22 |
|
195 | 6 Front 6 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
NMT-TY0977
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes; high strain Δ 35.3, geometry warning, and strain ΔE = 35.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.4 · logP 1.66 · TPSA 117.9
|
35.2 | 0.33 | 4.5692 | -1.4003 | 12 | 35.33 | 340.4 | 1.66 | 117.9 | 2.431 | 0.70 | 0.48 | 0 | 0 | 0.54 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; high strain Δ 35.3
|
|
| T22 T22 |
|
196 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z24541677
reasonable synthesis profile
DetailsWhy selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 3 clashes; 2 protein clashes; high strain Δ 36.0, geometry warning, and strain ΔE = 36.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 385.4 · logP 2.35 · TPSA 102.1
|
39.4 | 0.48 | 2.9115 | -1.1910 | 12 | 36.01 | 385.4 | 2.35 | 102.1 | 2.197 | 0.58 | 0.61 | 0 | 0 | 0.61 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 3 clashes; 2 protein clashes; high strain Δ 36.0
|
|
| T22 T22 |
|
197 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z18704485
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 379.4 · logP 3.88 · TPSA 88.6
|
40.5 | 0.49 | 2.0237 | -1.0753 | 12 | 27.03 | 379.4 | 3.88 | 88.6 | 2.389 | 0.58 | 0.73 | 0 | 0 | 0.37 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 27.0
|
|
| T22 T22 |
|
198 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z49724748
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 4 protein clashes; high strain Δ 32.9, geometry warning, and strain ΔE = 32.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 425.3 · logP 3.43 · TPSA 102.1
|
39.4 | 0.34 | 4.7740 | -1.4217 | 9 | 32.87 | 425.3 | 3.43 | 102.1 | 2.662 | 0.58 | 0.77 | 0 | 0 | 0.25 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 10 clashes; 4 protein clashes; high strain Δ 32.9
|
|
| T22 T22 |
|
199 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
|
Z2417557127
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 26.3, geometry warning, and strain ΔE = 26.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.9 · logP 4.27 · TPSA 92.5
|
34.5 | 0.37 | 3.4594 | -1.0568 | 11 | 26.26 | 422.9 | 4.27 | 92.5 | 2.493 | 0.36 | 0.72 | 0 | 0 | 0.44 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
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Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 26.3
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| T22 T22 |
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200 | 7 Front 7 |
Binding
Medium
Geometry
Bad
Data
Complete
Action
Redock or minimize
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Z30488659
native-like contacts, reasonable synthesis profile
DetailsWhy selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 30.4, geometry warning, and strain ΔE = 30.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 441.0 · logP 3.55 · TPSA 75.7
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37.5 | 0.36 | 3.4798 | -1.0821 | 11 | 30.43 | 441.0 | 3.55 | 75.7 | 2.294 | 0.58 | 0.70 | 0 | 0 | 0.79 |
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
|
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 30.4
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Score composition ▼ show
Docking 28% · final rank, interaction-normalized score, raw docking score
Burial 18% · absolute exposed hydrophobic atom count (lower is better)
Strain 14% · strain delta, intra score, geometry sanity
Safety / ADMET 18% · ADMET score with hERG/AMES/DILI/bioaccumulation penalties — Pareto objective
Ecotoxicology 9% · fish/daphnia/algae LC50 classes + bioaccumulation + persistence — Pareto objective
Synthesis 10% · SA score when available, otherwise Fsp3 proxy
Native similarity 12% · contact and H-bond recall when a native reference exists
Diversity shortlist 0% · cached shortlist already includes the novelty-aware selection step
How ranking works: Pareto fronts are built from six default objectives — docking score, ligand efficiency, burial depth, strain energy, ADMET safety, and ecotoxicology (fish/daphnia/algae LC₅₀ + bioaccumulation + persistence). Front 1 contains non-dominated ligands: no other ligand beats them across all six objectives simultaneously. Inside each front, ligands are ordered by a compromise score with explicit penalties for PAINS, reactivity, toxicity alerts, geometry warnings, excluded poses, and artifact annotations. The top 200 are returned using a diversity-aware selection step.
Methodology ▼ show
1. Candidate definition. For each target we keep one best pose per ligand, so the shortlist is not inflated by many similar poses of the same compound.
2. Objective set. Each ligand is evaluated across docking quality, absolute nonpolar solvent exposure (`n_exposed`), conformational strain, native-like interaction similarity when a native reference exists, safety and ecotoxicology, synthesizability, and general developability indicators such as QED.
2a. SASA / burial source. `SASA: done` = cached FreeSASA metrics. `queued/running` = background worker scheduled. `failed` = worker failed. `missing` = no SASA cached yet.
3. Liability penalties. PAINS motifs, reactive groups, toxicity alerts, artifact annotations, geometry warnings, and excluded-pose flags reduce the compromise score and are shown explicitly.
4. Pareto ranking. Front 1 = non-dominated ligands (no other ligand is better in all objectives simultaneously). Lower front number = more balanced profile.
5. Missing SASA handling. Missing SASA lowers `Data completeness` to `Provisional` but does not automatically reject a ligand. Binding and geometry axes stay independent.
6. Compromise score. `100 × clamp(weighted positive − liability penalty − missing-data penalty)`. Weights: docking 28%, burial 18%, strain 14%, safety/ecotox 18%, synthesis 10%, native similarity 12% (when reference exists).
7. Component details. Docking = `final_rank_score` 55% + `score_inter_norm` 30% + raw `score` 15%. Strain = `strain_delta` 55% + `score_intra_norm` 30% + geometry sanity 15%.
8. Final shortlist. Top 50 per target taken front-by-front with diversity-aware selection — near-duplicate analogs do not dominate.
How to read the table. `Pareto` = non-dominated layer, `Compromise` = within-front ordering score, `n_exposed` = burial proxy (lower is better), `Strain dE` = conformational stress, colored dots = quick green/orange/red cue.
How to use selections. Mark compounds row-by-row, save to `Current`/`Temp`/`A/B/C` sets, export to SDF/XLSX/CSV, or send to downstream analysis pages.