FAIRMol

OHD_Leishmania_125

ID 583

DB SELECTIONThis detail page is pinned to the current database context.
Back to results Open docking pose (5)
2D structure

SMILES: COC(=O)C1CCN(C(=O)c2ccc(N(Cc3ccccc3)Cc3cnc4nc(N)nc(N)c4n3)cc2)CC1

Formula: C28H30N8O3 | MW: 526.6010000000003

LogP: 2.8162000000000003 | TPSA: 153.45

HBA/HBD: 10/2 | RotB: 7

InChIKey: FGQMPGXSJKTERW-UHFFFAOYSA-N

Recognized patterns

Click a named motif to highlight it in the 2D depiction or launch reverse search.
Highlighted: 1 pattern H-bond acceptor N Clear highlight

Bio motif

ATP mimic pyrimidine N-Methyl amide ×2 H-bond acceptor N ×6 H-bond acceptor O ×3 H-bond donor ×2 Gatekeeper aromatic ×2 Ionizable base ×2 Metal chelator ×2 P-gp efflux flag ×2

Functional group

Carbonyl ×2 Amide Ester Primary amine ×2 Tertiary amine ×2 Lactam Ether

Ring system

Benzene ×2 Pyrimidine Pyrazine Pipecolinyl ring

Properties

NameValueUnit
DOCK_BASE_INTER_RANK-0.662100-
DOCK_BASE_INTER_RANK-0.688344-
DOCK_BASE_INTER_RANK-0.753880-
DOCK_BASE_INTER_RANK-0.846386-
DOCK_BASE_INTER_RANK-0.722747-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_CLASH_COUNT22.000000-
DOCK_CLASH_COUNT21.000000-
DOCK_CLASH_COUNT18.000000-
DOCK_CLASH_COUNT20.000000-
DOCK_CLASH_COUNT19.000000-
DOCK_CONTACT_COUNT22.000000-
DOCK_CONTACT_COUNT22.000000-
DOCK_CONTACT_COUNT22.000000-
DOCK_CONTACT_COUNT15.000000-
DOCK_CONTACT_COUNT18.000000-
DOCK_EXPERIMENTT01-
DOCK_EXPERIMENTT02-
DOCK_EXPERIMENTT03-
DOCK_EXPERIMENTT04-
DOCK_EXPERIMENTT05-
DOCK_EXPERIMENT_ID1-
DOCK_EXPERIMENT_ID2-
DOCK_EXPERIMENT_ID3-
DOCK_EXPERIMENT_ID4-
DOCK_EXPERIMENT_ID5-
DOCK_FINAL_RANK3.455778-
DOCK_FINAL_RANK2.291092-
DOCK_FINAL_RANK3.501157-
DOCK_FINAL_RANK2.450179-
DOCK_FINAL_RANK2.400738-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_IFP::A:ALA101-
DOCK_IFP::A:ALA101-
DOCK_IFP::A:ALA321-
DOCK_IFP::A:ARG171-
DOCK_IFP::A:ARG171-
DOCK_IFP::A:ARG971-
DOCK_IFP::A:ASN651-
DOCK_IFP::A:ASP1811-
DOCK_IFP::A:ASP221-
DOCK_IFP::A:ASP221-
DOCK_IFP::A:ASP2321-
DOCK_IFP::A:ASP2321-
DOCK_IFP::A:ASP521-
DOCK_IFP::A:GLN361-
DOCK_IFP::A:GLU311-
DOCK_IFP::A:GLU311-
DOCK_IFP::A:GLY2251-
DOCK_IFP::A:HIS2411-
DOCK_IFP::A:HIS2411-
DOCK_IFP::A:ILE451-
DOCK_IFP::A:ILE611-
DOCK_IFP::A:ILE611-
DOCK_IFP::A:ILE81-
DOCK_IFP::A:ILE81-
DOCK_IFP::A:LEU1791-
DOCK_IFP::A:LEU1881-
DOCK_IFP::A:LEU1881-
DOCK_IFP::A:LEU2261-
DOCK_IFP::A:LEU2261-
DOCK_IFP::A:LEU2291-
DOCK_IFP::A:LEU2291-
DOCK_IFP::A:LEU231-
DOCK_IFP::A:LEU231-
DOCK_IFP::A:LEU681-
DOCK_IFP::A:LEU681-
DOCK_IFP::A:LEU941-
DOCK_IFP::A:LYS1981-
DOCK_IFP::A:LYS1981-
DOCK_IFP::A:LYS571-
DOCK_IFP::A:LYS951-
DOCK_IFP::A:MET1831-
DOCK_IFP::A:MET2331-
DOCK_IFP::A:MET2331-
DOCK_IFP::A:MET531-
DOCK_IFP::A:NAP2011-
DOCK_IFP::A:NAP2011-
DOCK_IFP::A:NDP3011-
DOCK_IFP::A:NDP3021-
DOCK_IFP::A:NDP3021-
DOCK_IFP::A:PHE1131-
DOCK_IFP::A:PHE1131-
DOCK_IFP::A:PHE1351-
DOCK_IFP::A:PHE1801-
DOCK_IFP::A:PHE321-
DOCK_IFP::A:PHE321-
DOCK_IFP::A:PHE351-
DOCK_IFP::A:PHE351-
DOCK_IFP::A:PHE551-
DOCK_IFP::A:PHE561-
DOCK_IFP::A:PHE911-
DOCK_IFP::A:PRO261-
DOCK_IFP::A:PRO261-
DOCK_IFP::A:PRO271-
DOCK_IFP::A:PRO271-
DOCK_IFP::A:PRO621-
DOCK_IFP::A:PRO881-
DOCK_IFP::A:SER1111-
DOCK_IFP::A:SER1111-
DOCK_IFP::A:SER441-
DOCK_IFP::A:SER601-
DOCK_IFP::A:SER861-
DOCK_IFP::A:THR1371-
DOCK_IFP::A:THR1371-
DOCK_IFP::A:THR1801-
DOCK_IFP::A:THR571-
DOCK_IFP::A:THR571-
DOCK_IFP::A:TRP251-
DOCK_IFP::A:TRP251-
DOCK_IFP::A:TYR1221-
DOCK_IFP::A:TYR1621-
DOCK_IFP::A:TYR1781-
DOCK_IFP::A:TYR1911-
DOCK_IFP::A:TYR1911-
DOCK_IFP::A:TYR1941-
DOCK_IFP::A:TYR1941-
DOCK_IFP::A:TYR341-
DOCK_IFP::A:TYR341-
DOCK_IFP::A:VAL1161-
DOCK_IFP::A:VAL1161-
DOCK_IFP::A:VAL1361-
DOCK_IFP::A:VAL2301-
DOCK_IFP::A:VAL2301-
DOCK_IFP::A:VAL301-
DOCK_IFP::A:VAL311-
DOCK_IFP::A:VAL871-
DOCK_IFP::A:VAL91-
DOCK_IFP::A:VAL91-
DOCK_IFP::D:ARG2871-
DOCK_IFP::D:ARG2871-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_MAX_CLASH_OVERLAP0.680987-
DOCK_MAX_CLASH_OVERLAP0.681048-
DOCK_MAX_CLASH_OVERLAP0.681050-
DOCK_MAX_CLASH_OVERLAP0.681101-
DOCK_MAX_CLASH_OVERLAP0.681022-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_PRE_RANK3.424124-
DOCK_PRE_RANK2.259081-
DOCK_PRE_RANK3.436491-
DOCK_PRE_RANK2.352987-
DOCK_PRE_RANK2.365050-
DOCK_PRIMARY_POSE_ID10-
DOCK_PRIMARY_POSE_ID684-
DOCK_PRIMARY_POSE_ID1363-
DOCK_PRIMARY_POSE_ID2037-
DOCK_PRIMARY_POSE_ID2717-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_REPORT_IDselection_import_t01-
DOCK_REPORT_IDselection_import_t02-
DOCK_REPORT_IDselection_import_t03-
DOCK_REPORT_IDselection_import_t04-
DOCK_REPORT_IDselection_import_t05-
DOCK_RESIDUE_CONTACTSA:ALA10;A:ASP22;A:GLU31;A:ILE61;A:ILE8;A:LEU23;A:LEU68;A:NAP201;A:PHE135;A:PHE180;A:PHE32;A:PHE35;A:PRO26;A:PRO27;A:THR137;A:THR57;A:TRP25;A:TYR122;A:TYR34;A:VAL116;A:VAL136;A:VAL9-
DOCK_RESIDUE_CONTACTSA:ALA10;A:ASN65;A:ASP22;A:GLN36;A:GLU31;A:ILE61;A:ILE8;A:LEU23;A:LEU68;A:NAP201;A:PHE32;A:PHE35;A:PRO26;A:PRO27;A:PRO62;A:SER60;A:THR137;A:THR57;A:TRP25;A:TYR34;A:VAL116;A:VAL9-
DOCK_RESIDUE_CONTACTSA:ALA32;A:ARG97;A:ASP52;A:ILE45;A:LEU179;A:LEU94;A:LYS57;A:LYS95;A:MET53;A:NDP301;A:PHE55;A:PHE56;A:PHE91;A:PRO88;A:SER44;A:SER86;A:THR180;A:TYR162;A:TYR178;A:VAL30;A:VAL31;A:VAL87-
DOCK_RESIDUE_CONTACTSA:ARG17;A:ASP232;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:LYS198;A:MET233;A:NDP302;A:PHE113;A:SER111;A:TYR191;A:TYR194;A:VAL230;D:ARG287-
DOCK_RESIDUE_CONTACTSA:ARG17;A:ASP181;A:ASP232;A:GLY225;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:LYS198;A:MET183;A:MET233;A:NDP302;A:PHE113;A:SER111;A:TYR191;A:TYR194;A:VAL230;D:ARG287-
DOCK_SCAFFOLDO=C(c1ccc(N(Cc2ccccc2)Cc2cnc3ncncc3n2)cc1)N1CCCCC1-
DOCK_SCAFFOLDO=C(c1ccc(N(Cc2ccccc2)Cc2cnc3ncncc3n2)cc1)N1CCCCC1-
DOCK_SCAFFOLDO=C(c1ccc(N(Cc2ccccc2)Cc2cnc3ncncc3n2)cc1)N1CCCCC1-
DOCK_SCAFFOLDO=C(c1ccc(N(Cc2ccccc2)Cc2cnc3ncncc3n2)cc1)N1CCCCC1-
DOCK_SCAFFOLDO=C(c1ccc(N(Cc2ccccc2)Cc2cnc3ncncc3n2)cc1)N1CCCCC1-
DOCK_SCORE-24.952800-
DOCK_SCORE-23.156500-
DOCK_SCORE-25.761500-
DOCK_SCORE-25.697600-
DOCK_SCORE-31.440000-
DOCK_SCORE_INTER-25.821900-
DOCK_SCORE_INTER-26.845400-
DOCK_SCORE_INTER-29.401300-
DOCK_SCORE_INTER-33.009000-
DOCK_SCORE_INTER-28.187100-
DOCK_SCORE_INTER_KCAL-6.167458-
DOCK_SCORE_INTER_KCAL-6.411916-
DOCK_SCORE_INTER_KCAL-7.022383-
DOCK_SCORE_INTER_KCAL-7.884068-
DOCK_SCORE_INTER_KCAL-6.732376-
DOCK_SCORE_INTER_NORM-0.662100-
DOCK_SCORE_INTER_NORM-0.688344-
DOCK_SCORE_INTER_NORM-0.753880-
DOCK_SCORE_INTER_NORM-0.846386-
DOCK_SCORE_INTER_NORM-0.722747-
DOCK_SCORE_INTRA0.827815-
DOCK_SCORE_INTRA3.688900-
DOCK_SCORE_INTRA3.639840-
DOCK_SCORE_INTRA7.311470-
DOCK_SCORE_INTRA-3.252840-
DOCK_SCORE_INTRA_KCAL0.197720-
DOCK_SCORE_INTRA_KCAL0.881079-
DOCK_SCORE_INTRA_KCAL0.869361-
DOCK_SCORE_INTRA_KCAL1.746315-
DOCK_SCORE_INTRA_KCAL-0.776928-
DOCK_SCORE_INTRA_NORM0.021226-
DOCK_SCORE_INTRA_NORM0.094587-
DOCK_SCORE_INTRA_NORM0.093329-
DOCK_SCORE_INTRA_NORM0.187473-
DOCK_SCORE_INTRA_NORM-0.083406-
DOCK_SCORE_KCAL-5.959876-
DOCK_SCORE_KCAL-5.530837-
DOCK_SCORE_KCAL-6.153031-
DOCK_SCORE_KCAL-6.137769-
DOCK_SCORE_KCAL-7.509318-
DOCK_SCORE_NORM-0.639814-
DOCK_SCORE_NORM-0.593757-
DOCK_SCORE_NORM-0.660551-
DOCK_SCORE_NORM-0.658912-
DOCK_SCORE_NORM-0.806153-
DOCK_SCORE_RESTR0.041311-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR_NORM0.001059-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SOURCE_FILET01_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET02_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET03_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET04_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET05_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FORMULAC28H30N8O3-
DOCK_SOURCE_FORMULAC28H30N8O3-
DOCK_SOURCE_FORMULAC28H30N8O3-
DOCK_SOURCE_FORMULAC28H30N8O3-
DOCK_SOURCE_FORMULAC28H30N8O3-
DOCK_SOURCE_HBA10.000000-
DOCK_SOURCE_HBA10.000000-
DOCK_SOURCE_HBA10.000000-
DOCK_SOURCE_HBA10.000000-
DOCK_SOURCE_HBA10.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HEAVY_ATOMS39.000000-
DOCK_SOURCE_HEAVY_ATOMS39.000000-
DOCK_SOURCE_HEAVY_ATOMS39.000000-
DOCK_SOURCE_HEAVY_ATOMS39.000000-
DOCK_SOURCE_HEAVY_ATOMS39.000000-
DOCK_SOURCE_LOGP2.816200-
DOCK_SOURCE_LOGP2.816200-
DOCK_SOURCE_LOGP2.816200-
DOCK_SOURCE_LOGP2.816200-
DOCK_SOURCE_LOGP2.816200-
DOCK_SOURCE_MW526.601000-
DOCK_SOURCE_MW526.601000-
DOCK_SOURCE_MW526.601000-
DOCK_SOURCE_MW526.601000-
DOCK_SOURCE_MW526.601000-
DOCK_SOURCE_NAMEOHD_Leishmania_125-
DOCK_SOURCE_NAMEOHD_Leishmania_125-
DOCK_SOURCE_NAMEOHD_Leishmania_125-
DOCK_SOURCE_NAMEOHD_Leishmania_125-
DOCK_SOURCE_NAMEOHD_Leishmania_125-
DOCK_SOURCE_RINGS5.000000-
DOCK_SOURCE_RINGS5.000000-
DOCK_SOURCE_RINGS5.000000-
DOCK_SOURCE_RINGS5.000000-
DOCK_SOURCE_RINGS5.000000-
DOCK_SOURCE_TPSA153.450000-
DOCK_SOURCE_TPSA153.450000-
DOCK_SOURCE_TPSA153.450000-
DOCK_SOURCE_TPSA153.450000-
DOCK_SOURCE_TPSA153.450000-
DOCK_STRAIN_DELTA24.626327-
DOCK_STRAIN_DELTA24.854203-
DOCK_STRAIN_DELTA41.534084-
DOCK_STRAIN_DELTA54.726857-
DOCK_STRAIN_DELTA27.109424-
DOCK_STRAIN_OK1-
DOCK_STRAIN_OK1-
DOCK_STRAIN_OK0-
DOCK_STRAIN_OK0-
DOCK_STRAIN_OK1-
DOCK_TARGETT01-
DOCK_TARGETT02-
DOCK_TARGETT03-
DOCK_TARGETT04-
DOCK_TARGETT05-
EXACT_MASS526.24408682Da
FORMULAC28H30N8O3-
HBA10-
HBD2-
LOGP2.8162000000000003-
MOL_WEIGHT526.6010000000003g/mol
QED_SCORE0.3436398812789579-
ROTATABLE_BONDS7-
TPSA153.45A^2

Docking across targets

This compound is global in the current database. Below you can review all docking experiments and targets that contain imported poses for it, which is the basis for reverse docking analysis.

Open primary docking pose Docking experiments Reverse docking explorer Protein structures Docking IFP projection
TargetExperimentReportPosesBest rankBest scoreNative overlapNative recallRMSD
T02 T02 selection_import_t02 1
native pose available
 2.2910916142460835 -23.1565 18 0.86 - Best pose
T05 T05 selection_import_t05 1
native pose available
 2.4007376589143625 -31.44 15 0.88 - Best pose
T04 T04 selection_import_t04 1
native pose available
 2.450179306706148 -25.6976 14 0.74 - Best pose
T01 T01 selection_import_t01 1
native pose available
 3.4557775886697835 -24.9528 15 0.71 - Best pose
T03 T03 selection_import_t03 1
native pose available
 3.501156513452142 -25.7615 17 0.85 - Best pose
T02 — T02 1 poses · report selection_import_t02
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
6 2.2910916142460835 -0.688344 -23.1565 3 22 18 0.86 0.20 0.20 0.20 - no geometry warning; 21 clashes; 4 protein contact clashes; moderate strain Δ 24.9 Open pose
T05 — T05 1 poses · report selection_import_t05
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
7 2.4007376589143625 -0.722747 -31.44 6 18 15 0.88 0.71 0.67 0.80 - no geometry warning; 19 clashes; 6 protein contact clashes; 1 severe cofactor-context clash; moderate strain Δ 27.1 Open pose
T04 — T04 1 poses · report selection_import_t04
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
4 2.450179306706148 -0.846386 -25.6976 5 15 14 0.74 0.67 0.80 0.80 - no geometry warning; 20 clashes; 6 protein contact clashes; 3 cofactor-context clashes; high strain Δ 54.7 Open pose
T01 — T01 1 poses · report selection_import_t01
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
10 3.4557775886697835 -0.6621 -24.9528 5 22 15 0.71 0.20 0.20 0.20 - no geometry warning; 22 clashes; 1 protein clash; moderate strain Δ 24.6 Open pose
T03 — T03 1 poses · report selection_import_t03
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
8 3.501156513452142 -0.75388 -25.7615 11 22 17 0.85 0.29 0.20 0.20 - no geometry warning; 18 clashes; 1 protein clash; 2 cofactor-context clashes; high strain Δ 41.5 Open pose
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Drug Similarity

Shared structural fragments with approved drugs — based on faircheckmol profile fingerprint.
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Structural Profile Fingerprint

Named-bit fingerprint from curated SMARTS patterns. Each bit = one chemical pattern.

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ADMET Profile

Computed from structure using RDKit. Indicative only — not a substitute for experimental data.

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3D Conformer

ETKDGv3 conformer generation with UFF minimisation. Rendered with 3Dmol.js.

Open receptor–ligand complex
This docking hit has a stored pose-level complex analysis page with clickable hydrogen bonds, π–π contacts, hydrophobic contacts, and clash inspection.
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