FAIRMol

MK127

ID 4187

DB SELECTIONThis detail page is pinned to the current database context.
2D structure

SMILES: O=[N+](O)OC[C@H]1O[C@H](n2cnc3c(N4CCCCC4)ncnc32)[C@@H](O)[C@@H]1O

Formula: C15H21N6O6+ | MW: 381.3690000000001

LogP: -0.46449999999999986 | TPSA: 146.07

HBA/HBD: 9/3 | RotB: 5

InChIKey: YXWJXPNWXRUZGU-NYMYIZQJSA-N

Recognized patterns

Click a named motif to highlight it in the 2D depiction or launch reverse search.
Highlighted: 1 pattern Nucleoside sugar Clear highlight

Properties

NameValueUnit
DOCK_BASE_INTER_RANK-0.823814-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_CLASH_COUNT7.000000-
DOCK_CONTACT_COUNT15.000000-
DOCK_EXPERIMENTT14-
DOCK_EXPERIMENT_ID14-
DOCK_FINAL_RANK3.243432-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOM_OK0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_IFP::A:ARG221-
DOCK_IFP::A:ARG3421-
DOCK_IFP::A:ASN201-
DOCK_IFP::A:ASP3851-
DOCK_IFP::A:ASP441-
DOCK_IFP::A:CYS261-
DOCK_IFP::A:GLN3411-
DOCK_IFP::A:GLU3431-
DOCK_IFP::A:GLU3841-
DOCK_IFP::A:LEU251-
DOCK_IFP::A:LEU3821-
DOCK_IFP::A:PHE2841-
DOCK_IFP::A:SER2821-
DOCK_IFP::A:THR211-
DOCK_IFP::A:THR2851-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_MAX_CLASH_OVERLAP0.705356-
DOCK_POSE_COUNT1-
DOCK_PRE_RANK3.086536-
DOCK_PRIMARY_POSE_ID9096-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_REPORT_IDselection_import_t14-
DOCK_RESIDUE_CONTACTSA:ARG22;A:ARG342;A:ASN20;A:ASP385;A:ASP44;A:CYS26;A:GLN341;A:GLU343;A:GLU384;A:LEU25;A:LEU382;A:PHE284;A:SER282;A:THR21;A:THR285-
DOCK_SCAFFOLDc1nc(N2CCCCC2)c2ncn(C3CCCO3)c2n1-
DOCK_SCORE-25.477300-
DOCK_SCORE_INTER-22.243000-
DOCK_SCORE_INTER_KCAL-5.312652-
DOCK_SCORE_INTER_NORM-0.823814-
DOCK_SCORE_INTRA-3.234310-
DOCK_SCORE_INTRA_KCAL-0.772502-
DOCK_SCORE_INTRA_NORM-0.119789-
DOCK_SCORE_KCAL-6.085151-
DOCK_SCORE_NORM-0.943604-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SELECTION_EXCLUDED0-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SOURCE_FILET14_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FORMULAC15H21N6O6+-
DOCK_SOURCE_HBA9.000000-
DOCK_SOURCE_HBD3.000000-
DOCK_SOURCE_HEAVY_ATOMS27.000000-
DOCK_SOURCE_LOGP-0.464500-
DOCK_SOURCE_MW381.369000-
DOCK_SOURCE_NAMEMK127-
DOCK_SOURCE_RINGS4.000000-
DOCK_SOURCE_TPSA146.070000-
DOCK_STRAIN_DELTA76.633688-
DOCK_STRAIN_OK0-
DOCK_TARGETT14-
EXACT_MASS381.15170881208996Da
FORMULAC15H21N6O6+-
HBA9-
HBD3-
LOGP-0.46449999999999986-
MOL_WEIGHT381.3690000000001g/mol
QED_SCORE0.5811704518298477-
ROTATABLE_BONDS5-
TPSA146.07A^2

Docking across targets

This compound is global in the current database. Below you can review all docking experiments and targets that contain imported poses for it, which is the basis for reverse docking analysis.

TargetExperimentReportPosesBest rankBest scoreNative overlapNative recallRMSD
T14 T14 selection_import_t14 1
native pose available
3.2434318162983145 -25.4773 8 0.53 - Best pose
T14 — T14 1 poses · report selection_import_t14
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
288 3.2434318162983145 -0.823814 -25.4773 11 15 8 0.53 0.17 0.20 0.40 - no geometry warning; 7 clashes; 2 protein clashes; high strain Δ 76.6 Open pose
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Drug Similarity

Shared structural fragments with approved drugs — based on faircheckmol profile fingerprint.
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Structural Profile Fingerprint

Named-bit fingerprint from curated SMARTS patterns. Each bit = one chemical pattern.

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ADMET Profile

Computed from structure using RDKit. Indicative only — not a substitute for experimental data.

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3D Conformer

ETKDGv3 conformer generation with UFF minimisation. Rendered with 3Dmol.js.

This docking hit has a stored pose-level complex analysis page with clickable hydrogen bonds, π–π contacts, hydrophobic contacts, and clash inspection.
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