FAIRMol

OHD_Leishmania_486

ID 1313

DB fairmolThis detail page is pinned to the current database context.
2D structure

SMILES: c1ccc2c(NCCc3c[nH]c[nH+]3)nncc2c1

Formula: C13H14N5+ | MW: 240.29

LogP: 1.4265999999999992 | TPSA: 67.74000000000001

HBA/HBD: 3/2 | RotB: 4

InChIKey: ZKGLBBOGVFYGKP-UHFFFAOYSA-O

Recognized patterns

Click a named motif to highlight it in the 2D depiction or launch reverse search.
Highlighted: 1 pattern Gatekeeper aromatic Clear highlight

Properties

NameValueUnit
DOCK_BASE_INTER_RANK-1.783050-
DOCK_BASE_INTER_RANK-1.535740-
DOCK_BASE_INTER_RANK-1.259720-
DOCK_BASE_INTER_RANK-1.343170-
DOCK_BASE_INTER_RANK-1.254830-
DOCK_BASE_INTER_RANK-1.790850-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_CLASH_COUNT7.000000-
DOCK_CLASH_COUNT6.000000-
DOCK_CLASH_COUNT6.000000-
DOCK_CLASH_COUNT7.000000-
DOCK_CLASH_COUNT6.000000-
DOCK_CLASH_COUNT7.000000-
DOCK_CONTACT_COUNT12.000000-
DOCK_CONTACT_COUNT11.000000-
DOCK_CONTACT_COUNT16.000000-
DOCK_CONTACT_COUNT16.000000-
DOCK_CONTACT_COUNT13.000000-
DOCK_CONTACT_COUNT9.000000-
DOCK_EXPERIMENTT06-
DOCK_EXPERIMENTT03-
DOCK_EXPERIMENTT07-
DOCK_EXPERIMENTT04-
DOCK_EXPERIMENTT06-
DOCK_EXPERIMENTT07-
DOCK_EXPERIMENT_ID4-
DOCK_EXPERIMENT_ID6-
DOCK_EXPERIMENT_ID3-
DOCK_EXPERIMENT_ID7-
DOCK_EXPERIMENT_ID6-
DOCK_EXPERIMENT_ID7-
DOCK_FINAL_RANK-0.667909-
DOCK_FINAL_RANK1.591177-
DOCK_FINAL_RANK-0.020206-
DOCK_FINAL_RANK2.615368-
DOCK_FINAL_RANK-0.631519-
DOCK_FINAL_RANK1.445649-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_IFP::A:ALA341-
DOCK_IFP::A:ALA341-
DOCK_IFP::A:ARG141-
DOCK_IFP::A:ARG141-
DOCK_IFP::A:ARG171-
DOCK_IFP::A:ARG971-
DOCK_IFP::A:ASN1751-
DOCK_IFP::A:ASN1751-
DOCK_IFP::A:ASP1611-
DOCK_IFP::A:ASP1611-
DOCK_IFP::A:ASP541-
DOCK_IFP::A:ASP541-
DOCK_IFP::A:CYS1681-
DOCK_IFP::A:CYS1681-
DOCK_IFP::A:GLN1661-
DOCK_IFP::A:GLY1611-
DOCK_IFP::A:GLY1611-
DOCK_IFP::A:GLY2251-
DOCK_IFP::A:HIS2411-
DOCK_IFP::A:ILE1601-
DOCK_IFP::A:ILE1601-
DOCK_IFP::A:LEU1881-
DOCK_IFP::A:LEU2081-
DOCK_IFP::A:LEU2081-
DOCK_IFP::A:LEU2091-
DOCK_IFP::A:LEU2091-
DOCK_IFP::A:LEU2261-
DOCK_IFP::A:LEU2291-
DOCK_IFP::A:LEU901-
DOCK_IFP::A:LEU901-
DOCK_IFP::A:LEU941-
DOCK_IFP::A:LEU971-
DOCK_IFP::A:LEU971-
DOCK_IFP::A:LYS571-
DOCK_IFP::A:LYS901-
DOCK_IFP::A:LYS951-
DOCK_IFP::A:MET1631-
DOCK_IFP::A:MET1631-
DOCK_IFP::A:MET2331-
DOCK_IFP::A:MET531-
DOCK_IFP::A:MET551-
DOCK_IFP::A:MET551-
DOCK_IFP::A:NAP3011-
DOCK_IFP::A:NAP3011-
DOCK_IFP::A:NDP3011-
DOCK_IFP::A:NDP3011-
DOCK_IFP::A:NDP3021-
DOCK_IFP::A:PHE1131-
DOCK_IFP::A:PHE2331-
DOCK_IFP::A:PHE2331-
DOCK_IFP::A:PHE561-
DOCK_IFP::A:PHE581-
DOCK_IFP::A:PHE581-
DOCK_IFP::A:PHE911-
DOCK_IFP::A:PHE971-
DOCK_IFP::A:PHE971-
DOCK_IFP::A:PRO1671-
DOCK_IFP::A:PRO1671-
DOCK_IFP::A:PRO2101-
DOCK_IFP::A:PRO2101-
DOCK_IFP::A:PRO931-
DOCK_IFP::A:THR1841-
DOCK_IFP::A:THR1841-
DOCK_IFP::A:THR861-
DOCK_IFP::A:THR861-
DOCK_IFP::A:TYR1661-
DOCK_IFP::A:TYR1661-
DOCK_IFP::A:TYR1741-
DOCK_IFP::A:TYR1741-
DOCK_IFP::A:TYR1941-
DOCK_IFP::A:TYR571-
DOCK_IFP::A:TYR571-
DOCK_IFP::A:VAL321-
DOCK_IFP::A:VAL321-
DOCK_IFP::A:VAL331-
DOCK_IFP::A:VAL331-
DOCK_IFP::D:ARG2871-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_MAX_CLASH_OVERLAP0.651941-
DOCK_MAX_CLASH_OVERLAP0.651865-
DOCK_MAX_CLASH_OVERLAP0.651838-
DOCK_MAX_CLASH_OVERLAP0.688833-
DOCK_MAX_CLASH_OVERLAP0.651791-
DOCK_MAX_CLASH_OVERLAP0.651795-
DOCK_POSE_COUNT2-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT2-
DOCK_PRE_RANK2.561631-
DOCK_PRE_RANK-0.057427-
DOCK_PRE_RANK1.415296-
DOCK_PRE_RANK-0.699551-
DOCK_PRE_RANK1.561203-
DOCK_PRE_RANK-0.664452-
DOCK_PRIMARY_POSE_ID3463-
DOCK_PRIMARY_POSE_ID4146-
DOCK_PRIMARY_POSE_ID1391-
DOCK_PRIMARY_POSE_ID2081-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_REPORT_IDselection_import_t07-
DOCK_REPORT_IDselection_import_t06-
DOCK_REPORT_IDselection_import_t03-
DOCK_REPORT_IDselection_import_t07-
DOCK_REPORT_IDselection_import_t06-
DOCK_REPORT_IDselection_import_t04-
DOCK_RESIDUE_CONTACTSA:ARG14;A:ASN175;A:ASP161;A:CYS168;A:LEU208;A:LEU209;A:MET163;A:NAP301;A:PHE97;A:PRO167;A:PRO210;A:TYR174-
DOCK_RESIDUE_CONTACTSA:ARG14;A:ASN175;A:ASP161;A:CYS168;A:GLN166;A:LEU208;A:LEU209;A:MET163;A:NAP301;A:PHE97;A:PRO167;A:PRO210;A:TYR174-
DOCK_RESIDUE_CONTACTSA:ARG17;A:GLY225;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:MET233;A:NDP302;A:PHE113;A:TYR194;D:ARG287-
DOCK_RESIDUE_CONTACTSA:ALA34;A:ASP54;A:GLY161;A:ILE160;A:LEU90;A:LEU97;A:MET55;A:NDP301;A:PHE233;A:PHE58;A:THR184;A:THR86;A:TYR166;A:TYR57;A:VAL32;A:VAL33-
DOCK_RESIDUE_CONTACTSA:ARG97;A:LEU94;A:LYS57;A:LYS90;A:LYS95;A:MET53;A:PHE56;A:PHE91;A:PRO93-
DOCK_RESIDUE_CONTACTSA:ALA34;A:ASP54;A:GLY161;A:ILE160;A:LEU90;A:LEU97;A:MET55;A:NDP301;A:PHE233;A:PHE58;A:THR184;A:THR86;A:TYR166;A:TYR57;A:VAL32;A:VAL33-
DOCK_SCAFFOLDc1ccc2c(NCCc3cnc[nH]3)[nH+]ncc2c1-
DOCK_SCAFFOLDc1ccc2c(NCCc3cnc[nH]3)[nH+]ncc2c1-
DOCK_SCAFFOLDc1ccc2c(NCCc3c[nH]c[nH+]3)nncc2c1-
DOCK_SCAFFOLDc1ccc2c(NCCc3c[nH]cn3)[nH+]ncc2c1-
DOCK_SCAFFOLDc1ccc2c(NCCc3c[nH]cn3)[nH+]ncc2c1-
DOCK_SCAFFOLDc1ccc2c(NCCc3c[nH]cn3)[nH+]ncc2c1-
DOCK_SCORE-21.117200-
DOCK_SCORE-21.055800-
DOCK_SCORE-30.674600-
DOCK_SCORE-26.144000-
DOCK_SCORE-21.996800-
DOCK_SCORE-30.867300-
DOCK_SCORE_INTER-27.643300-
DOCK_SCORE_INTER-22.587000-
DOCK_SCORE_INTER-22.675000-
DOCK_SCORE_INTER-32.094900-
DOCK_SCORE_INTER-24.177000-
DOCK_SCORE_INTER-32.235300-
DOCK_SCORE_INTER_KCAL-6.602492-
DOCK_SCORE_INTER_KCAL-7.665738-
DOCK_SCORE_INTER_KCAL-5.394815-
DOCK_SCORE_INTER_KCAL-7.699272-
DOCK_SCORE_INTER_KCAL-5.774580-
DOCK_SCORE_INTER_KCAL-5.415833-
DOCK_SCORE_INTER_NORM-1.259720-
DOCK_SCORE_INTER_NORM-1.790850-
DOCK_SCORE_INTER_NORM-1.343170-
DOCK_SCORE_INTER_NORM-1.783050-
DOCK_SCORE_INTER_NORM-1.254830-
DOCK_SCORE_INTER_NORM-1.535740-
DOCK_SCORE_INTRA1.227660-
DOCK_SCORE_INTRA1.619260-
DOCK_SCORE_INTRA1.469860-
DOCK_SCORE_INTRA1.499260-
DOCK_SCORE_INTRA2.180160-
DOCK_SCORE_INTRA1.560780-
DOCK_SCORE_INTRA_KCAL0.372786-
DOCK_SCORE_INTRA_KCAL0.351070-
DOCK_SCORE_INTRA_KCAL0.386754-
DOCK_SCORE_INTRA_KCAL0.358092-
DOCK_SCORE_INTRA_KCAL0.520722-
DOCK_SCORE_INTRA_KCAL0.293222-
DOCK_SCORE_INTRA_NORM0.086710-
DOCK_SCORE_INTRA_NORM0.089959-
DOCK_SCORE_INTRA_NORM0.081659-
DOCK_SCORE_INTRA_NORM0.083293-
DOCK_SCORE_INTRA_NORM0.121120-
DOCK_SCORE_INTRA_NORM0.068203-
DOCK_SCORE_KCAL-5.253848-
DOCK_SCORE_KCAL-6.244390-
DOCK_SCORE_KCAL-7.326506-
DOCK_SCORE_KCAL-5.043759-
DOCK_SCORE_KCAL-7.372531-
DOCK_SCORE_KCAL-5.029094-
DOCK_SCORE_NORM-1.714850-
DOCK_SCORE_NORM-1.173180-
DOCK_SCORE_NORM-1.169770-
DOCK_SCORE_NORM-1.452450-
DOCK_SCORE_NORM-1.222050-
DOCK_SCORE_NORM-1.704140-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SOURCE_FILET03_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET04_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET06_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET06_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET07_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET07_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FORMULAC13H14N5+-
DOCK_SOURCE_FORMULAC13H14N5+-
DOCK_SOURCE_FORMULAC13H14N5+-
DOCK_SOURCE_FORMULAC13H14N5+-
DOCK_SOURCE_FORMULAC13H14N5+-
DOCK_SOURCE_FORMULAC13H14N5+-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HEAVY_ATOMS18.000000-
DOCK_SOURCE_HEAVY_ATOMS18.000000-
DOCK_SOURCE_HEAVY_ATOMS18.000000-
DOCK_SOURCE_HEAVY_ATOMS18.000000-
DOCK_SOURCE_HEAVY_ATOMS18.000000-
DOCK_SOURCE_HEAVY_ATOMS18.000000-
DOCK_SOURCE_LOGP1.426600-
DOCK_SOURCE_LOGP1.426600-
DOCK_SOURCE_LOGP1.426600-
DOCK_SOURCE_LOGP1.426600-
DOCK_SOURCE_LOGP1.426600-
DOCK_SOURCE_LOGP1.426600-
DOCK_SOURCE_MW240.290000-
DOCK_SOURCE_MW240.290000-
DOCK_SOURCE_MW240.290000-
DOCK_SOURCE_MW240.290000-
DOCK_SOURCE_MW240.290000-
DOCK_SOURCE_MW240.290000-
DOCK_SOURCE_NAMEOHD_Leishmania_486-
DOCK_SOURCE_NAMEOHD_TC1_122-
DOCK_SOURCE_NAMEOHD_TC1_122-
DOCK_SOURCE_NAMEOHD_Leishmania_486-
DOCK_SOURCE_NAMEOHD_TC1_122-
DOCK_SOURCE_NAMEOHD_Leishmania_486-
DOCK_SOURCE_RINGS3.000000-
DOCK_SOURCE_RINGS3.000000-
DOCK_SOURCE_RINGS3.000000-
DOCK_SOURCE_RINGS3.000000-
DOCK_SOURCE_RINGS3.000000-
DOCK_SOURCE_RINGS3.000000-
DOCK_SOURCE_TPSA67.740000-
DOCK_SOURCE_TPSA67.740000-
DOCK_SOURCE_TPSA67.740000-
DOCK_SOURCE_TPSA67.740000-
DOCK_SOURCE_TPSA67.740000-
DOCK_SOURCE_TPSA67.740000-
DOCK_STRAIN_DELTA36.574280-
DOCK_STRAIN_DELTA24.619082-
DOCK_STRAIN_DELTA23.782511-
DOCK_STRAIN_DELTA25.434930-
DOCK_STRAIN_DELTA23.531911-
DOCK_STRAIN_DELTA28.006861-
DOCK_STRAIN_OK1-
DOCK_STRAIN_OK1-
DOCK_STRAIN_OK1-
DOCK_STRAIN_OK1-
DOCK_STRAIN_OK1-
DOCK_STRAIN_OK0-
DOCK_TARGETT06-
DOCK_TARGETT04-
DOCK_TARGETT07-
DOCK_TARGETT07-
DOCK_TARGETT03-
DOCK_TARGETT06-
EXACT_MASS240.12437186808998Da
FORMULAC13H14N5+-
HBA3-
HBD2-
LOGP1.4265999999999992-
MOL_WEIGHT240.29g/mol
QED_SCORE0.7245024410084988-
ROTATABLE_BONDS4-
TPSA67.74000000000001A^2

Docking across targets

This compound is global in the current database. Below you can review all docking experiments and targets that contain imported poses for it, which is the basis for reverse docking analysis.

TargetExperimentReportPosesBest rankBest scoreNative overlapNative recallRMSD
T07 T07 selection_import_t07 2
native pose available
-0.6679087576044241 -30.8673 9 0.47 - Best pose
T04 T04 selection_import_t04 1
native pose available
-0.02020639105148412 -21.9968 11 0.58 - Best pose
T06 T06 selection_import_t06 2
native pose available
1.445649010736051 -21.1172 15 0.71 - Best pose
T03 T03 selection_import_t03 1
native pose available
2.6153677676742206 -26.144 6 0.30 - Best pose
T07 — T07 2 poses · report selection_import_t07
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
32 -0.6679087576044241 -1.78305 -30.8673 7 13 9 0.47 0.33 0.60 0.60 - no geometry warning; 6 clashes; 2 protein contact clashes; 1 severe cofactor-context clash; moderate strain Δ 24.6 Open pose
83 -0.6315186198883889 -1.79085 -30.6746 7 12 9 0.47 0.33 0.60 0.60 - no geometry warning; 6 clashes; 2 protein contact clashes; 1 severe cofactor-context clash; moderate strain Δ 25.4 Open pose
T04 — T04 1 poses · report selection_import_t04
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
48 -0.02020639105148412 -1.34317 -21.9968 4 11 11 0.58 0.33 0.40 0.40 - no geometry warning; 7 clashes; 3 protein contact clashes; 3 cofactor-context clashes; moderate strain Δ 28.0 Open pose
T06 — T06 2 poses · report selection_import_t06
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
35 1.445649010736051 -1.25483 -21.1172 4 16 15 0.71 0.40 0.50 0.50 - no geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 23.8 Open pose
77 1.5911771072222323 -1.25972 -21.0558 4 16 15 0.71 0.40 0.50 0.50 - no geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 23.5 Open pose
T03 — T03 1 poses · report selection_import_t03
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
36 2.6153677676742206 -1.53574 -26.144 7 9 6 0.30 0.29 0.20 0.20 - no geometry warning; 6 clashes; 2 protein clashes; high strain Δ 36.6 Open pose
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Drug Similarity

Shared structural fragments with approved drugs — based on faircheckmol profile fingerprint.
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Structural Profile Fingerprint

Named-bit fingerprint from curated SMARTS patterns. Each bit = one chemical pattern.

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ADMET Profile

Computed from structure using RDKit. Indicative only — not a substitute for experimental data.

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3D Conformer

ETKDGv3 conformer generation with UFF minimisation. Rendered with 3Dmol.js.

This docking hit has a stored pose-level complex analysis page with clickable hydrogen bonds, π–π contacts, hydrophobic contacts, and clash inspection.
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