FAIRMol

Z1213651839

ID 1009

DB fairmolThis detail page is pinned to the current database context.
Back to results Open docking pose (2)
2D structure

SMILES: Cc1cccn2c(=O)c3cc(C(=O)NCCc4ccccc4)c(=[NH2+])n(CCCn4cc[nH+]c4)c3nc12

Formula: C27H29N7O2+2 | MW: 483.57600000000025

LogP: 0.29582000000000236 | TPSA: 113.06000000000002

HBA/HBD: 3/2 | RotB: 8

InChIKey: RDTGAUNECHODQB-UHFFFAOYSA-P

Recognized patterns

Click a named motif to highlight it in the 2D depiction or launch reverse search.
Highlighted: 1 pattern H-bond acceptor N Clear highlight

Bio motif

ATP mimic pyrimidine Hinge binder (C=O-NH) Hinge binder (NH-C=O) H-bond acceptor N ×5 H-bond acceptor O ×2 H-bond donor ×3 Gatekeeper aromatic Ionizable base Metal chelator

Functional group

Carbonyl Amide Secondary amine

Ring system

Benzene Pyridine ×2 Imidazole Pyrimidine Pyrazolo[1,5-a]pyridine

Properties

NameValueUnit
DOCK_BASE_INTER_RANK-0.675950-
DOCK_BASE_INTER_RANK-0.778306-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_CLASH_COUNT19.000000-
DOCK_CLASH_COUNT18.000000-
DOCK_CONTACT_COUNT18.000000-
DOCK_CONTACT_COUNT14.000000-
DOCK_EXPERIMENTT04-
DOCK_EXPERIMENTT02-
DOCK_EXPERIMENT_ID2-
DOCK_EXPERIMENT_ID4-
DOCK_FINAL_RANK1.962864-
DOCK_FINAL_RANK3.413312-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_IFP::A:ALA101-
DOCK_IFP::A:ARG171-
DOCK_IFP::A:ARG291-
DOCK_IFP::A:ASN651-
DOCK_IFP::A:GLU311-
DOCK_IFP::A:GLY2401-
DOCK_IFP::A:HIS2411-
DOCK_IFP::A:ILE611-
DOCK_IFP::A:ILE81-
DOCK_IFP::A:LEU1881-
DOCK_IFP::A:LEU2261-
DOCK_IFP::A:LEU2291-
DOCK_IFP::A:LEU231-
DOCK_IFP::A:LEU281-
DOCK_IFP::A:LEU681-
DOCK_IFP::A:LYS2441-
DOCK_IFP::A:NDP3021-
DOCK_IFP::A:PHE1131-
DOCK_IFP::A:PHE1351-
DOCK_IFP::A:PHE321-
DOCK_IFP::A:PHE351-
DOCK_IFP::A:PRO1151-
DOCK_IFP::A:PRO271-
DOCK_IFP::A:THR1371-
DOCK_IFP::A:TRP251-
DOCK_IFP::A:TYR1911-
DOCK_IFP::A:TYR1941-
DOCK_IFP::A:TYR341-
DOCK_IFP::A:VAL1161-
DOCK_IFP::A:VAL2371-
DOCK_IFP::A:VAL91-
DOCK_IFP::D:ARG2871-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_MAX_CLASH_OVERLAP0.647847-
DOCK_MAX_CLASH_OVERLAP0.647790-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_PRE_RANK1.921802-
DOCK_PRE_RANK3.349214-
DOCK_PRIMARY_POSE_ID1273-
DOCK_PRIMARY_POSE_ID2637-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_REPORT_IDselection_import_t02-
DOCK_REPORT_IDselection_import_t04-
DOCK_RESIDUE_CONTACTSA:ALA10;A:ARG29;A:ASN65;A:GLU31;A:ILE61;A:ILE8;A:LEU23;A:LEU28;A:LEU68;A:PHE135;A:PHE32;A:PHE35;A:PRO27;A:THR137;A:TRP25;A:TYR34;A:VAL116;A:VAL9-
DOCK_RESIDUE_CONTACTSA:ARG17;A:GLY240;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:LYS244;A:NDP302;A:PHE113;A:PRO115;A:TYR191;A:TYR194;A:VAL237;D:ARG287-
DOCK_SCAFFOLD[NH2+]=c1c(C(=O)NCCc2ccccc2)cc2c(=O)n3ccccc3nc2n1CCCn1cc[nH+]c1-
DOCK_SCAFFOLD[NH2+]=c1c(C(=O)NCCc2ccccc2)cc2c(=O)n3ccccc3nc2n1CCCn1cc[nH+]c1-
DOCK_SCORE-22.904300-
DOCK_SCORE-22.721000-
DOCK_SCORE_INTER-28.019000-
DOCK_SCORE_INTER-24.334200-
DOCK_SCORE_INTER_KCAL-6.692226-
DOCK_SCORE_INTER_KCAL-5.812126-
DOCK_SCORE_INTER_NORM-0.675950-
DOCK_SCORE_INTER_NORM-0.778306-
DOCK_SCORE_INTRA1.429910-
DOCK_SCORE_INTRA5.297980-
DOCK_SCORE_INTRA_KCAL1.265401-
DOCK_SCORE_INTRA_KCAL0.341528-
DOCK_SCORE_INTRA_NORM0.039720-
DOCK_SCORE_INTRA_NORM0.147166-
DOCK_SCORE_KCAL-5.426820-
DOCK_SCORE_KCAL-5.470600-
DOCK_SCORE_NORM-0.631140-
DOCK_SCORE_NORM-0.636231-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SOURCE_FILET04_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET02_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FORMULAC27H29N7O2+2-
DOCK_SOURCE_FORMULAC27H29N7O2+2-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBA3.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HBD2.000000-
DOCK_SOURCE_HEAVY_ATOMS36.000000-
DOCK_SOURCE_HEAVY_ATOMS36.000000-
DOCK_SOURCE_LOGP0.295820-
DOCK_SOURCE_LOGP0.295820-
DOCK_SOURCE_MW483.576000-
DOCK_SOURCE_MW483.576000-
DOCK_SOURCE_NAMEZ1213651839-
DOCK_SOURCE_NAMEZ1213651839-
DOCK_SOURCE_RINGS5.000000-
DOCK_SOURCE_RINGS5.000000-
DOCK_SOURCE_TPSA113.060000-
DOCK_SOURCE_TPSA113.060000-
DOCK_STRAIN_DELTA30.162346-
DOCK_STRAIN_DELTA41.286118-
DOCK_STRAIN_OK0-
DOCK_STRAIN_OK0-
DOCK_TARGETT04-
DOCK_TARGETT02-
EXACT_MASS483.23717600818014Da
FORMULAC27H29N7O2+2-
HBA3-
HBD2-
LOGP0.29582000000000236-
MOL_WEIGHT483.57600000000025g/mol
QED_SCORE0.3095209490178396-
ROTATABLE_BONDS8-
TPSA113.06000000000002A^2

Docking across targets

This compound is global in the current database. Below you can review all docking experiments and targets that contain imported poses for it, which is the basis for reverse docking analysis.

Open primary docking pose Docking experiments Reverse docking explorer Protein structures Docking IFP projection
TargetExperimentReportPosesBest rankBest scoreNative overlapNative recallRMSD
T04 T04 selection_import_t04 1
native pose available
 1.9628641250214884 -22.9043 11 0.58 - Best pose
T02 T02 selection_import_t02 1
native pose available
 3.4133124848535488 -22.721 12 0.57 - Best pose
T04 — T04 1 poses · report selection_import_t04
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
604 1.9628641250214884 -0.67595 -22.9043 4 14 11 0.58 0.17 0.20 0.20 - no geometry warning; 18 clashes; 4 protein contact clashes; high strain Δ 30.2 Open pose
T02 — T02 1 poses · report selection_import_t02
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
595 3.4133124848535488 -0.778306 -22.721 6 18 12 0.57 0.20 0.20 0.20 - no geometry warning; 19 clashes; 1 protein clash; high strain Δ 41.3 Open pose
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Drug Similarity

Shared structural fragments with approved drugs — based on faircheckmol profile fingerprint.
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Structural Profile Fingerprint

Named-bit fingerprint from curated SMARTS patterns. Each bit = one chemical pattern.

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ADMET Profile

Computed from structure using RDKit. Indicative only — not a substitute for experimental data.

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3D Conformer

ETKDGv3 conformer generation with UFF minimisation. Rendered with 3Dmol.js.

Open receptor–ligand complex
This docking hit has a stored pose-level complex analysis page with clickable hydrogen bonds, π–π contacts, hydrophobic contacts, and clash inspection.
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